Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN9P43378 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN9P43378 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN9P43378 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
PTPN9P43378 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PTPN9P43378 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
PTPN9P43378 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.69■□□□□ 0.42
PTPN9P43378 AL645728.1-201ENST00000366221 2101 ntBASIC17.69■□□□□ 0.42
PTPN9P43378 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 AC099398.1-201ENST00000567919 2776 ntBASIC17.69■□□□□ 0.42
PTPN9P43378 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.69■□□□□ 0.42
PTPN9P43378 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.69■□□□□ 0.42
PTPN9P43378 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.69■□□□□ 0.42
PTPN9P43378 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.69■□□□□ 0.42
PTPN9P43378 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
PTPN9P43378 AC108073.2-201ENST00000464002 357 ntBASIC17.69■□□□□ 0.42
PTPN9P43378 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.69■□□□□ 0.42
PTPN9P43378 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PTPN9P43378 AL121894.2-201ENST00000602977 491 ntBASIC17.69■□□□□ 0.42
PTPN9P43378 AC013467.2-201ENST00000605472 835 ntBASIC17.69■□□□□ 0.42
PTPN9P43378 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.69■□□□□ 0.42
PTPN9P43378 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.69■□□□□ 0.42
PTPN9P43378 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
PTPN9P43378 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PTPN9P43378 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 AC011676.5-201ENST00000624864 2660 ntBASIC17.69■□□□□ 0.42
PTPN9P43378 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.69■□□□□ 0.42
PTPN9P43378 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 RNF216P1-203ENST00000404404 2427 ntBASIC17.69■□□□□ 0.42
PTPN9P43378 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PTPN9P43378 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
PTPN9P43378 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.68■□□□□ 0.42
PTPN9P43378 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN9P43378 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN9P43378 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.68■□□□□ 0.42
PTPN9P43378 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.68■□□□□ 0.42
PTPN9P43378 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN9P43378 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN9P43378 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.68■□□□□ 0.42
PTPN9P43378 MRPL20P1-201ENST00000400819 433 ntBASIC17.68■□□□□ 0.42
PTPN9P43378 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.68■□□□□ 0.42
PTPN9P43378 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN9P43378 IGHV3-22-201ENST00000520721 359 ntBASIC17.68■□□□□ 0.42
PTPN9P43378 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN9P43378 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.68■□□□□ 0.42
PTPN9P43378 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN9P43378 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.68■□□□□ 0.42
PTPN9P43378 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
PTPN9P43378 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN9P43378 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN9P43378 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.68■□□□□ 0.42
PTPN9P43378 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
PTPN9P43378 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN9P43378 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
PTPN9P43378 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN9P43378 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PTPN9P43378 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.68■□□□□ 0.42
PTPN9P43378 AC129492.6-201ENST00000611383 1305 ntBASIC17.68■□□□□ 0.42
PTPN9P43378 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.68■□□□□ 0.42
PTPN9P43378 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
PTPN9P43378 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN9P43378 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
PTPN9P43378 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.67■□□□□ 0.42
PTPN9P43378 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
PTPN9P43378 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN9P43378 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN9P43378 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PTPN9P43378 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN9P43378 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
PTPN9P43378 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
PTPN9P43378 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.67■□□□□ 0.42
PTPN9P43378 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PTPN9P43378 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN9P43378 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN9P43378 FDX1P1-201ENST00000449115 551 ntBASIC17.67■□□□□ 0.42
PTPN9P43378 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN9P43378 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN9P43378 OR7E47P-204ENST00000575924 449 ntBASIC17.67■□□□□ 0.42
PTPN9P43378 AC091167.2-201ENST00000579581 588 ntBASIC17.67■□□□□ 0.42
PTPN9P43378 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
PTPN9P43378 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.67■□□□□ 0.42
PTPN9P43378 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN9P43378 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PTPN9P43378 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.67■□□□□ 0.42
PTPN9P43378 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.67■□□□□ 0.42
PTPN9P43378 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms