Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.48■□□□□ 0.39
COL6A3P12111 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.48■□□□□ 0.39
COL6A3P12111 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.48■□□□□ 0.39
COL6A3P12111 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A3P12111 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC17.48■□□□□ 0.39
COL6A3P12111 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A3P12111 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
COL6A3P12111 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.48■□□□□ 0.39
COL6A3P12111 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A3P12111 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A3P12111 AC091804.1-201ENST00000486888 567 ntBASIC17.48■□□□□ 0.39
COL6A3P12111 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
COL6A3P12111 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC17.48■□□□□ 0.39
COL6A3P12111 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC17.48■□□□□ 0.39
COL6A3P12111 RN7SL828P-201ENST00000607615 303 ntBASIC17.48■□□□□ 0.39
COL6A3P12111 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC17.48■□□□□ 0.39
COL6A3P12111 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.48■□□□□ 0.39
COL6A3P12111 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A3P12111 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A3P12111 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A3P12111 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A3P12111 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.48■□□□□ 0.39
COL6A3P12111 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.48■□□□□ 0.39
COL6A3P12111 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A3P12111 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A3P12111 AL353705.2-201ENST00000428243 662 ntBASIC17.48■□□□□ 0.39
COL6A3P12111 FTLP1-201ENST00000449155 526 ntBASIC17.48■□□□□ 0.39
COL6A3P12111 OARD1-212ENST00000482515 832 ntTSL 2 BASIC17.48■□□□□ 0.39
COL6A3P12111 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.48■□□□□ 0.39
COL6A3P12111 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC17.48■□□□□ 0.39
COL6A3P12111 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.48■□□□□ 0.39
COL6A3P12111 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A3P12111 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A3P12111 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A3P12111 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.47■□□□□ 0.39
COL6A3P12111 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.47■□□□□ 0.39
COL6A3P12111 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A3P12111 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A3P12111 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A3P12111 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.47■□□□□ 0.39
COL6A3P12111 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A3P12111 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
COL6A3P12111 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
COL6A3P12111 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
COL6A3P12111 MIR4750-201ENST00000584564 56 ntBASIC17.47■□□□□ 0.39
COL6A3P12111 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC17.47■□□□□ 0.39
COL6A3P12111 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.47■□□□□ 0.39
COL6A3P12111 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.47■□□□□ 0.39
COL6A3P12111 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
COL6A3P12111 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A3P12111 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A3P12111 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.46■□□□□ 0.39
COL6A3P12111 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A3P12111 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC17.46■□□□□ 0.39
COL6A3P12111 AC004898.1-201ENST00000451057 766 ntBASIC17.46■□□□□ 0.39
COL6A3P12111 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC17.46■□□□□ 0.39
COL6A3P12111 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.46■□□□□ 0.39
COL6A3P12111 AC005412.3-201ENST00000580309 715 ntBASIC17.46■□□□□ 0.39
COL6A3P12111 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.46■□□□□ 0.39
COL6A3P12111 AL022328.3-201ENST00000607943 679 ntBASIC17.46■□□□□ 0.39
COL6A3P12111 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A3P12111 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A3P12111 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A3P12111 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A3P12111 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A3P12111 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.46■□□□□ 0.39
COL6A3P12111 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A3P12111 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A3P12111 AC008267.1-201ENST00000474858 1069 ntBASIC17.46■□□□□ 0.39
COL6A3P12111 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC17.46■□□□□ 0.39
COL6A3P12111 AL008638.5-201ENST00000623814 1298 ntBASIC17.46■□□□□ 0.39
COL6A3P12111 ABBA01031663.1-201ENST00000635630 790 ntBASIC17.46■□□□□ 0.39
COL6A3P12111 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A3P12111 AC093010.1-201ENST00000473625 1624 ntBASIC17.46■□□□□ 0.39
COL6A3P12111 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A3P12111 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
COL6A3P12111 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A3P12111 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A3P12111 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
COL6A3P12111 BX284668.4-201ENST00000453917 508 ntBASIC17.46■□□□□ 0.39
COL6A3P12111 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC17.46■□□□□ 0.39
COL6A3P12111 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A3P12111 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms