Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.14■□□□□ 0.65
COL11A1P12107 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
COL11A1P12107 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL11A1P12107 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COL11A1P12107 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC19.14■□□□□ 0.65
COL11A1P12107 CRB3P1-201ENST00000449338 276 ntBASIC19.14■□□□□ 0.65
COL11A1P12107 KRT18P34-201ENST00000488218 1270 ntBASIC19.14■□□□□ 0.65
COL11A1P12107 MIR4745-201ENST00000577608 62 ntBASIC19.14■□□□□ 0.65
COL11A1P12107 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL11A1P12107 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL11A1P12107 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
COL11A1P12107 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL11A1P12107 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL11A1P12107 LINC02012-201ENST00000608206 1725 ntBASIC19.13■□□□□ 0.65
COL11A1P12107 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.13■□□□□ 0.65
COL11A1P12107 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL11A1P12107 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL11A1P12107 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.13■□□□□ 0.65
COL11A1P12107 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
COL11A1P12107 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
COL11A1P12107 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC19.13■□□□□ 0.65
COL11A1P12107 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.13■□□□□ 0.65
COL11A1P12107 AC007967.4-201ENST00000614700 386 ntBASIC19.13■□□□□ 0.65
COL11A1P12107 SPDYE12P-201ENST00000618416 771 ntBASIC19.13■□□□□ 0.65
COL11A1P12107 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL11A1P12107 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL11A1P12107 AC092068.3-201ENST00000587894 2016 ntBASIC19.13■□□□□ 0.65
COL11A1P12107 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL11A1P12107 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL11A1P12107 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL11A1P12107 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL11A1P12107 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL11A1P12107 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC19.12■□□□□ 0.65
COL11A1P12107 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL11A1P12107 MIR346-201ENST00000362234 95 ntBASIC19.12■□□□□ 0.65
COL11A1P12107 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL11A1P12107 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC19.12■□□□□ 0.65
COL11A1P12107 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC19.12■□□□□ 0.65
COL11A1P12107 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL11A1P12107 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC19.12■□□□□ 0.65
COL11A1P12107 AC241585.1-201ENST00000433527 519 ntBASIC19.12■□□□□ 0.65
COL11A1P12107 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC19.12■□□□□ 0.65
COL11A1P12107 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.12■□□□□ 0.65
COL11A1P12107 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC19.12■□□□□ 0.65
COL11A1P12107 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC19.12■□□□□ 0.65
COL11A1P12107 SNX33P1-201ENST00000592116 1762 ntBASIC19.12■□□□□ 0.65
COL11A1P12107 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
COL11A1P12107 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL11A1P12107 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL11A1P12107 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL11A1P12107 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL11A1P12107 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
COL11A1P12107 RBM7-207ENST00000544582 692 ntTSL 3 BASIC19.11■□□□□ 0.65
COL11A1P12107 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.11■□□□□ 0.65
COL11A1P12107 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
COL11A1P12107 AC073592.8-201ENST00000624126 511 ntBASIC19.11■□□□□ 0.65
COL11A1P12107 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.11■□□□□ 0.65
COL11A1P12107 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL11A1P12107 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
COL11A1P12107 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL11A1P12107 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL11A1P12107 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL11A1P12107 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.11■□□□□ 0.65
COL11A1P12107 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.11■□□□□ 0.65
COL11A1P12107 AC073439.1-201ENST00000624121 1774 ntBASIC19.11■□□□□ 0.65
COL11A1P12107 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL11A1P12107 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL11A1P12107 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL11A1P12107 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC19.11■□□□□ 0.65
COL11A1P12107 POLD4-211ENST00000539074 714 ntTSL 3 BASIC19.11■□□□□ 0.65
COL11A1P12107 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL11A1P12107 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC19.11■□□□□ 0.65
COL11A1P12107 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.11■□□□□ 0.65
COL11A1P12107 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL11A1P12107 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL11A1P12107 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL11A1P12107 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.11■□□□□ 0.65
COL11A1P12107 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
COL11A1P12107 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL11A1P12107 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL11A1P12107 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL11A1P12107 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
COL11A1P12107 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL11A1P12107 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.1■□□□□ 0.65
COL11A1P12107 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL11A1P12107 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL11A1P12107 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.1■□□□□ 0.65
COL11A1P12107 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
COL11A1P12107 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
COL11A1P12107 COPE-202ENST00000349893 948 ntTSL 2 BASIC19.1■□□□□ 0.65
COL11A1P12107 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.1■□□□□ 0.65
COL11A1P12107 RNA5SP421-201ENST00000516864 134 ntBASIC19.1■□□□□ 0.65
COL11A1P12107 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC19.1■□□□□ 0.65
COL11A1P12107 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC19.1■□□□□ 0.65
COL11A1P12107 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC19.1■□□□□ 0.65
COL11A1P12107 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC19.1■□□□□ 0.65
COL11A1P12107 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC19.1■□□□□ 0.65
COL11A1P12107 AP001350.2-201ENST00000625104 1094 ntBASIC19.1■□□□□ 0.65
COL11A1P12107 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.1■□□□□ 0.65
COL11A1P12107 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms