Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX2-2O95096 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX2-2O95096 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX2-2O95096 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX2-2O95096 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NKX2-2O95096 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX2-2O95096 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC15.72■□□□□ 0.11
NKX2-2O95096 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.72■□□□□ 0.11
NKX2-2O95096 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX2-2O95096 AL031284.1-201ENST00000419297 478 ntBASIC15.72■□□□□ 0.11
NKX2-2O95096 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
NKX2-2O95096 TPM4P1-201ENST00000436100 807 ntBASIC15.72■□□□□ 0.11
NKX2-2O95096 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC15.72■□□□□ 0.11
NKX2-2O95096 SLC25A6P2-201ENST00000497974 877 ntBASIC15.72■□□□□ 0.11
NKX2-2O95096 IGHV3-65-201ENST00000523210 341 ntBASIC15.72■□□□□ 0.11
NKX2-2O95096 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC15.72■□□□□ 0.11
NKX2-2O95096 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC15.72■□□□□ 0.11
NKX2-2O95096 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.72■□□□□ 0.11
NKX2-2O95096 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC15.72■□□□□ 0.11
NKX2-2O95096 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX2-2O95096 REXO1L3P-201ENST00000622202 1288 ntBASIC15.72■□□□□ 0.11
NKX2-2O95096 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.72■□□□□ 0.11
NKX2-2O95096 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NKX2-2O95096 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NKX2-2O95096 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.72■□□□□ 0.11
NKX2-2O95096 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC15.72■□□□□ 0.11
NKX2-2O95096 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.72■□□□□ 0.11
NKX2-2O95096 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
NKX2-2O95096 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.72■□□□□ 0.11
NKX2-2O95096 FLJ38576-201ENST00000623820 2459 ntBASIC15.72■□□□□ 0.11
NKX2-2O95096 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
NKX2-2O95096 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX2-2O95096 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
NKX2-2O95096 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NKX2-2O95096 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC15.72■□□□□ 0.11
NKX2-2O95096 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NKX2-2O95096 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.71■□□□□ 0.11
NKX2-2O95096 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.71■□□□□ 0.11
NKX2-2O95096 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.71■□□□□ 0.11
NKX2-2O95096 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.71■□□□□ 0.11
NKX2-2O95096 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.71■□□□□ 0.11
NKX2-2O95096 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.71■□□□□ 0.11
NKX2-2O95096 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
NKX2-2O95096 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.71■□□□□ 0.11
NKX2-2O95096 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC15.71■□□□□ 0.11
NKX2-2O95096 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
NKX2-2O95096 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.71■□□□□ 0.11
NKX2-2O95096 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
NKX2-2O95096 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.71■□□□□ 0.11
NKX2-2O95096 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.71■□□□□ 0.11
NKX2-2O95096 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.71■□□□□ 0.11
NKX2-2O95096 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.71■□□□□ 0.11
NKX2-2O95096 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
NKX2-2O95096 AC013467.2-201ENST00000605472 835 ntBASIC15.71■□□□□ 0.11
NKX2-2O95096 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
NKX2-2O95096 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.71■□□□□ 0.11
NKX2-2O95096 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.71■□□□□ 0.11
NKX2-2O95096 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 AL391256.1-201ENST00000443260 1855 ntBASIC15.71■□□□□ 0.11
NKX2-2O95096 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX2-2O95096 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
NKX2-2O95096 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
NKX2-2O95096 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
NKX2-2O95096 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC15.71■□□□□ 0.1
NKX2-2O95096 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
NKX2-2O95096 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
NKX2-2O95096 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
NKX2-2O95096 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX2-2O95096 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
NKX2-2O95096 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX2-2O95096 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
NKX2-2O95096 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX2-2O95096 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX2-2O95096 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX2-2O95096 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX2-2O95096 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX2-2O95096 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
NKX2-2O95096 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX2-2O95096 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC15.7■□□□□ 0.1
NKX2-2O95096 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.7■□□□□ 0.1
NKX2-2O95096 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX2-2O95096 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
NKX2-2O95096 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX2-2O95096 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
NKX2-2O95096 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms