Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC14.57□□□□□ -0.08
SDCBPO00560 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDCBPO00560 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDCBPO00560 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC14.57□□□□□ -0.08
SDCBPO00560 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDCBPO00560 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDCBPO00560 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.57□□□□□ -0.08
SDCBPO00560 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDCBPO00560 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
SDCBPO00560 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDCBPO00560 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDCBPO00560 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
SDCBPO00560 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC14.56□□□□□ -0.08
SDCBPO00560 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.56□□□□□ -0.08
SDCBPO00560 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC14.56□□□□□ -0.08
SDCBPO00560 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC14.56□□□□□ -0.08
SDCBPO00560 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.56□□□□□ -0.08
SDCBPO00560 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.56□□□□□ -0.08
SDCBPO00560 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.56□□□□□ -0.08
SDCBPO00560 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SDCBPO00560 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SDCBPO00560 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 AL031133.1-201ENST00000406807 723 ntBASIC14.56□□□□□ -0.08
SDCBPO00560 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 AC096633.1-201ENST00000422446 749 ntBASIC14.56□□□□□ -0.08
SDCBPO00560 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC14.56□□□□□ -0.08
SDCBPO00560 FAM210CP-201ENST00000445714 574 ntBASIC14.56□□□□□ -0.08
SDCBPO00560 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC14.56□□□□□ -0.08
SDCBPO00560 KRT8P26-201ENST00000534154 1276 ntBASIC14.56□□□□□ -0.08
SDCBPO00560 AC011840.4-201ENST00000578471 627 ntBASIC14.56□□□□□ -0.08
SDCBPO00560 NTF6B-201ENST00000591913 560 ntBASIC14.56□□□□□ -0.08
SDCBPO00560 AL121956.5-201ENST00000625261 221 ntBASIC14.56□□□□□ -0.08
SDCBPO00560 VPS72-207ENST00000640458 689 ntTSL 5 BASIC14.56□□□□□ -0.08
SDCBPO00560 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC14.56□□□□□ -0.08
SDCBPO00560 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SDCBPO00560 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC14.56□□□□□ -0.08
SDCBPO00560 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
SDCBPO00560 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC14.56□□□□□ -0.08
SDCBPO00560 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SDCBPO00560 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SDCBPO00560 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC14.55□□□□□ -0.08
SDCBPO00560 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.55□□□□□ -0.08
SDCBPO00560 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC14.55□□□□□ -0.08
SDCBPO00560 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 AC026691.1-201ENST00000602502 2017 ntBASIC14.55□□□□□ -0.08
SDCBPO00560 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC14.55□□□□□ -0.08
SDCBPO00560 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC14.55□□□□□ -0.08
SDCBPO00560 BX276092.5-203ENST00000456199 560 ntBASIC14.55□□□□□ -0.08
SDCBPO00560 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 AC002558.1-201ENST00000488906 803 ntBASIC14.55□□□□□ -0.08
SDCBPO00560 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC14.55□□□□□ -0.08
SDCBPO00560 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC14.55□□□□□ -0.08
SDCBPO00560 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC14.55□□□□□ -0.08
SDCBPO00560 AC087388.1-201ENST00000571370 1112 ntBASIC14.55□□□□□ -0.08
SDCBPO00560 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SDCBPO00560 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 GCK-209ENST00000616242 2260 ntTSL 5 BASIC14.55□□□□□ -0.08
SDCBPO00560 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SDCBPO00560 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.55□□□□□ -0.08
SDCBPO00560 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SDCBPO00560 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.55□□□□□ -0.08
SDCBPO00560 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC14.55□□□□□ -0.08
SDCBPO00560 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SDCBPO00560 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SDCBPO00560 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SDCBPO00560 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms