Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.1■□□□□ 0.65
COL4A3BPQ9Y5P4 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
COL4A3BPQ9Y5P4 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A3BPQ9Y5P4 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A3BPQ9Y5P4 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A3BPQ9Y5P4 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A3BPQ9Y5P4 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.1■□□□□ 0.65
COL4A3BPQ9Y5P4 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
COL4A3BPQ9Y5P4 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A3BPQ9Y5P4 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 PTCHD3P3-201ENST00000403073 906 ntBASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 AC007967.2-201ENST00000432613 625 ntBASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 KRT18P3-201ENST00000451602 1288 ntBASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 AC108073.2-201ENST00000464002 357 ntBASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL4A3BPQ9Y5P4 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A3BPQ9Y5P4 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
COL4A3BPQ9Y5P4 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A3BPQ9Y5P4 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A3BPQ9Y5P4 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A3BPQ9Y5P4 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
COL4A3BPQ9Y5P4 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL4A3BPQ9Y5P4 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 PGAM5P1-201ENST00000518923 814 ntBASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL4A3BPQ9Y5P4 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 NF2-208ENST00000403435 2568 ntTSL 5 BASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 AL590787.1-201ENST00000568856 1315 ntBASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 AC060834.1-201ENST00000443027 2032 ntBASIC19.07■□□□□ 0.64
COL4A3BPQ9Y5P4 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms