Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
SHROOM4Q9ULL8 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC32.17■■■□□ 2.74
SHROOM4Q9ULL8 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
SHROOM4Q9ULL8 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
SHROOM4Q9ULL8 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC32.17■■■□□ 2.74
SHROOM4Q9ULL8 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC32.17■■■□□ 2.74
SHROOM4Q9ULL8 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
SHROOM4Q9ULL8 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 CD81-202ENST00000381036 880 ntTSL 3 BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 AL161645.1-201ENST00000622716 1255 ntBASIC32.16■■■□□ 2.74
SHROOM4Q9ULL8 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
SHROOM4Q9ULL8 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC32.15■■■□□ 2.74
SHROOM4Q9ULL8 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC32.15■■■□□ 2.74
SHROOM4Q9ULL8 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
SHROOM4Q9ULL8 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
SHROOM4Q9ULL8 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
SHROOM4Q9ULL8 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC32.15■■■□□ 2.74
SHROOM4Q9ULL8 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
SHROOM4Q9ULL8 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC32.15■■■□□ 2.74
SHROOM4Q9ULL8 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC32.15■■■□□ 2.74
SHROOM4Q9ULL8 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC32.15■■■□□ 2.74
SHROOM4Q9ULL8 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
SHROOM4Q9ULL8 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
SHROOM4Q9ULL8 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
SHROOM4Q9ULL8 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
SHROOM4Q9ULL8 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
SHROOM4Q9ULL8 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC32.14■■■□□ 2.74
SHROOM4Q9ULL8 KRT17P7-201ENST00000451704 1104 ntBASIC32.14■■■□□ 2.74
SHROOM4Q9ULL8 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC32.14■■■□□ 2.74
SHROOM4Q9ULL8 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
SHROOM4Q9ULL8 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC32.14■■■□□ 2.74
SHROOM4Q9ULL8 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC32.14■■■□□ 2.74
SHROOM4Q9ULL8 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC32.14■■■□□ 2.74
SHROOM4Q9ULL8 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC32.14■■■□□ 2.74
SHROOM4Q9ULL8 AC134043.2-201ENST00000624206 2238 ntBASIC32.14■■■□□ 2.74
SHROOM4Q9ULL8 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC32.14■■■□□ 2.74
SHROOM4Q9ULL8 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC32.14■■■□□ 2.74
SHROOM4Q9ULL8 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC32.14■■■□□ 2.74
SHROOM4Q9ULL8 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
SHROOM4Q9ULL8 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC32.14■■■□□ 2.73
SHROOM4Q9ULL8 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.73
SHROOM4Q9ULL8 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC32.14■■■□□ 2.73
SHROOM4Q9ULL8 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
SHROOM4Q9ULL8 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
SHROOM4Q9ULL8 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
SHROOM4Q9ULL8 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
SHROOM4Q9ULL8 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
SHROOM4Q9ULL8 AC109635.5-201ENST00000533593 962 ntBASIC32.12■■■□□ 2.73
SHROOM4Q9ULL8 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC32.12■■■□□ 2.73
SHROOM4Q9ULL8 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
SHROOM4Q9ULL8 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC32.12■■■□□ 2.73
SHROOM4Q9ULL8 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC32.12■■■□□ 2.73
SHROOM4Q9ULL8 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC32.12■■■□□ 2.73
SHROOM4Q9ULL8 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC32.12■■■□□ 2.73
SHROOM4Q9ULL8 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC32.12■■■□□ 2.73
SHROOM4Q9ULL8 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC32.12■■■□□ 2.73
SHROOM4Q9ULL8 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
SHROOM4Q9ULL8 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC32.11■■■□□ 2.73
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms