Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.08■□□□□ 0.32
TM9SF3Q9HD45 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 TSEN15P1-201ENST00000423257 515 ntBASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 AC068137.2-201ENST00000605408 478 ntBASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TM9SF3Q9HD45 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 FAM185BP-201ENST00000443595 716 ntBASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 AC093028.1-201ENST00000622998 982 ntBASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 AL135999.2-201ENST00000622438 1686 ntBASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TM9SF3Q9HD45 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 AC046185.3-201ENST00000623228 1824 ntBASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.05■□□□□ 0.32
TM9SF3Q9HD45 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms