Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 AP005117.1-201ENST00000584346 1413 ntBASIC17.65■□□□□ 0.42
PCDH9Q9HC56 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 AC092171.3-201ENST00000610122 2651 ntBASIC17.65■□□□□ 0.42
PCDH9Q9HC56 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
PCDH9Q9HC56 AC018695.7-201ENST00000624587 2492 ntBASIC17.64■□□□□ 0.42
PCDH9Q9HC56 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
PCDH9Q9HC56 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 UNC93B7-201ENST00000509439 705 ntBASIC17.64■□□□□ 0.41
PCDH9Q9HC56 AC106795.1-205ENST00000512851 1056 ntBASIC17.64■□□□□ 0.41
PCDH9Q9HC56 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 REXO1L6P-202ENST00000619970 1078 ntBASIC17.64■□□□□ 0.41
PCDH9Q9HC56 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
PCDH9Q9HC56 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 RBM17P3-201ENST00000417687 1192 ntBASIC17.63■□□□□ 0.41
PCDH9Q9HC56 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
PCDH9Q9HC56 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH9Q9HC56 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.62■□□□□ 0.41
PCDH9Q9HC56 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.62■□□□□ 0.41
PCDH9Q9HC56 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH9Q9HC56 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH9Q9HC56 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PCDH9Q9HC56 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms