Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 AC092597.1-201ENST00000487352 616 ntBASIC10.24□□□□□ -0.77
LIMD2Q9BT23 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 AC090616.6-201ENST00000582640 721 ntBASIC10.24□□□□□ -0.77
LIMD2Q9BT23 AC005332.3-201ENST00000589904 676 ntBASIC10.24□□□□□ -0.77
LIMD2Q9BT23 AL390719.2-201ENST00000606993 987 ntBASIC10.24□□□□□ -0.77
LIMD2Q9BT23 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 AL121761.2-201ENST00000598007 1648 ntBASIC10.24□□□□□ -0.77
LIMD2Q9BT23 Z83836.1-201ENST00000624605 1642 ntBASIC10.24□□□□□ -0.77
LIMD2Q9BT23 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 LINC00554-201ENST00000564841 3011 ntBASIC10.24□□□□□ -0.77
LIMD2Q9BT23 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
LIMD2Q9BT23 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 MTCL1P1-201ENST00000446207 792 ntBASIC10.23□□□□□ -0.77
LIMD2Q9BT23 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC10.23□□□□□ -0.77
LIMD2Q9BT23 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms