Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
TRIM56Q9BRZ2 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.46■□□□□ 0.38
TRIM56Q9BRZ2 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 AC008894.3-201ENST00000624324 3103 ntBASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 AC009336.1-201ENST00000608941 1553 ntBASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 IER3-202ENST00000376377 1350 ntBASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 AC103564.2-201ENST00000432853 1299 ntBASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 AC111152.3-201ENST00000569699 673 ntBASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 MIR3180-1-201ENST00000580374 94 ntBASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 MIR3180-3-201ENST00000584616 94 ntBASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 AD001527.2-201ENST00000622994 785 ntBASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 AC148477.5-201ENST00000625164 1645 ntBASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TRIM56Q9BRZ2 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 NSUN5P1-202ENST00000421140 1535 ntBASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 NSUN5P2-203ENST00000457352 1529 ntBASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 RCN1P2-201ENST00000398357 915 ntBASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 DRAXINP1-201ENST00000437611 948 ntBASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 LINC00265-3P-201ENST00000447588 903 ntBASIC17.44■□□□□ 0.38
TRIM56Q9BRZ2 AC096582.2-201ENST00000510860 516 ntBASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms