Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 SRP19-202ENST00000445150 833 ntTSL 2 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 Z69720.1-201ENST00000601483 472 ntBASIC12.83□□□□□ -0.36
LINC00477Q96M19 AC073592.5-201ENST00000624854 528 ntBASIC12.83□□□□□ -0.36
LINC00477Q96M19 AL121956.5-201ENST00000625261 221 ntBASIC12.83□□□□□ -0.36
LINC00477Q96M19 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 AC132938.5-201ENST00000624980 1813 ntBASIC12.83□□□□□ -0.36
LINC00477Q96M19 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 AL139384.1-201ENST00000612143 3047 ntBASIC12.83□□□□□ -0.36
LINC00477Q96M19 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC12.83□□□□□ -0.36
LINC00477Q96M19 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LINC00477Q96M19 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 SIGLEC30P-201ENST00000455569 941 ntBASIC12.82□□□□□ -0.36
LINC00477Q96M19 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 NTF6B-201ENST00000591913 560 ntBASIC12.82□□□□□ -0.36
LINC00477Q96M19 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 TP73-AS1-210ENST00000637775 1455 ntBASIC12.82□□□□□ -0.36
LINC00477Q96M19 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC12.82□□□□□ -0.36
LINC00477Q96M19 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LINC00477Q96M19 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
LINC00477Q96M19 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
LINC00477Q96M19 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms