Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 AC010240.3-201ENST00000607688 395 ntBASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 PAUPAR-201ENST00000630360 2965 ntBASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
ZNF540Q8NDQ6 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 STARP1-201ENST00000397973 869 ntBASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 AC009947.2-201ENST00000444014 672 ntBASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 AL359075.1-203ENST00000462729 1002 ntBASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 AC034232.1-201ENST00000506026 1064 ntBASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
ZNF540Q8NDQ6 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 FAM86EP-206ENST00000510506 987 ntBASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 BX276092.7-203ENST00000637198 1536 ntBASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ZNF540Q8NDQ6 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms