Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 GOLGA2P9-201ENST00000596977 1937 ntBASIC22.4■■□□□ 1.18
USP54Q70EL1 AC134043.2-201ENST00000624206 2238 ntBASIC22.4■■□□□ 1.18
USP54Q70EL1 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
USP54Q70EL1 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
USP54Q70EL1 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
USP54Q70EL1 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
USP54Q70EL1 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
USP54Q70EL1 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC22.39■■□□□ 1.18
USP54Q70EL1 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC22.39■■□□□ 1.18
USP54Q70EL1 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC22.39■■□□□ 1.18
USP54Q70EL1 AL353705.2-201ENST00000428243 662 ntBASIC22.39■■□□□ 1.18
USP54Q70EL1 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.18
USP54Q70EL1 RN7SL692P-201ENST00000464677 288 ntBASIC22.39■■□□□ 1.18
USP54Q70EL1 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.18
USP54Q70EL1 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC22.39■■□□□ 1.18
USP54Q70EL1 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.18
USP54Q70EL1 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
USP54Q70EL1 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC22.39■■□□□ 1.18
USP54Q70EL1 RAB34-223ENST00000636154 730 ntTSL 2 BASIC22.39■■□□□ 1.18
USP54Q70EL1 AL139011.1-202ENST00000642063 584 ntBASIC22.39■■□□□ 1.18
USP54Q70EL1 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC22.39■■□□□ 1.18
USP54Q70EL1 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
USP54Q70EL1 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC22.39■■□□□ 1.18
USP54Q70EL1 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
USP54Q70EL1 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
USP54Q70EL1 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC22.39■■□□□ 1.17
USP54Q70EL1 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC22.39■■□□□ 1.17
USP54Q70EL1 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC22.39■■□□□ 1.17
USP54Q70EL1 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
USP54Q70EL1 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
USP54Q70EL1 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
USP54Q70EL1 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC22.39■■□□□ 1.17
USP54Q70EL1 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC22.39■■□□□ 1.17
USP54Q70EL1 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
USP54Q70EL1 NAA50-208ENST00000497255 789 ntTSL 5 BASIC22.39■■□□□ 1.17
USP54Q70EL1 AC027369.6-201ENST00000525520 931 ntBASIC22.39■■□□□ 1.17
USP54Q70EL1 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC22.39■■□□□ 1.17
USP54Q70EL1 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC22.39■■□□□ 1.17
USP54Q70EL1 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC22.39■■□□□ 1.17
USP54Q70EL1 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
USP54Q70EL1 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC22.39■■□□□ 1.17
USP54Q70EL1 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
USP54Q70EL1 AC006277.1-201ENST00000624348 1610 ntBASIC22.38■■□□□ 1.17
USP54Q70EL1 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
USP54Q70EL1 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
USP54Q70EL1 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC22.38■■□□□ 1.17
USP54Q70EL1 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
USP54Q70EL1 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC22.38■■□□□ 1.17
USP54Q70EL1 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
USP54Q70EL1 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
USP54Q70EL1 HNRNPA3P1-201ENST00000401429 1139 ntBASIC22.38■■□□□ 1.17
USP54Q70EL1 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
USP54Q70EL1 AC005034.1-201ENST00000426657 489 ntBASIC22.38■■□□□ 1.17
USP54Q70EL1 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
USP54Q70EL1 AC093724.1-201ENST00000448659 1027 ntBASIC22.38■■□□□ 1.17
USP54Q70EL1 HNRNPA3P5-201ENST00000455201 833 ntBASIC22.38■■□□□ 1.17
USP54Q70EL1 PRR29-204ENST00000577953 565 ntTSL 4 BASIC22.38■■□□□ 1.17
USP54Q70EL1 AL132655.2-201ENST00000596276 594 ntBASIC22.38■■□□□ 1.17
USP54Q70EL1 SRP9-204ENST00000619790 377 ntTSL 2 BASIC22.38■■□□□ 1.17
USP54Q70EL1 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
USP54Q70EL1 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
USP54Q70EL1 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC22.38■■□□□ 1.17
USP54Q70EL1 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC22.38■■□□□ 1.17
USP54Q70EL1 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
USP54Q70EL1 AL035456.1-201ENST00000456064 1369 ntBASIC22.38■■□□□ 1.17
USP54Q70EL1 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
USP54Q70EL1 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
USP54Q70EL1 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
USP54Q70EL1 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
USP54Q70EL1 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC22.37■■□□□ 1.17
USP54Q70EL1 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
USP54Q70EL1 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC22.37■■□□□ 1.17
USP54Q70EL1 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
USP54Q70EL1 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC22.37■■□□□ 1.17
USP54Q70EL1 MPI-209ENST00000564003 1195 ntTSL 2 BASIC22.37■■□□□ 1.17
USP54Q70EL1 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC22.37■■□□□ 1.17
USP54Q70EL1 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC22.37■■□□□ 1.17
USP54Q70EL1 ARL16-202ENST00000570561 768 ntTSL 2 BASIC22.37■■□□□ 1.17
USP54Q70EL1 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC22.37■■□□□ 1.17
USP54Q70EL1 AC061975.2-201ENST00000581722 295 ntBASIC22.37■■□□□ 1.17
USP54Q70EL1 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC22.37■■□□□ 1.17
USP54Q70EL1 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
USP54Q70EL1 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
USP54Q70EL1 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
USP54Q70EL1 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
USP54Q70EL1 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC22.37■■□□□ 1.17
USP54Q70EL1 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
USP54Q70EL1 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
USP54Q70EL1 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
USP54Q70EL1 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
USP54Q70EL1 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
USP54Q70EL1 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC22.36■■□□□ 1.17
USP54Q70EL1 CETN4P-206ENST00000642099 2168 ntBASIC22.36■■□□□ 1.17
USP54Q70EL1 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
USP54Q70EL1 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
USP54Q70EL1 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC22.36■■□□□ 1.17
USP54Q70EL1 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC22.36■■□□□ 1.17
USP54Q70EL1 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
USP54Q70EL1 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
USP54Q70EL1 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms