Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.85■□□□□ 0.45
HDAC4P56524 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.85■□□□□ 0.45
HDAC4P56524 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.85■□□□□ 0.45
HDAC4P56524 AP002414.1-201ENST00000391405 1147 ntBASIC17.85■□□□□ 0.45
HDAC4P56524 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.85■□□□□ 0.45
HDAC4P56524 ELK2BP-201ENST00000415014 1224 ntBASIC17.85■□□□□ 0.45
HDAC4P56524 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.85■□□□□ 0.45
HDAC4P56524 KRT18P27-201ENST00000427733 1299 ntBASIC17.85■□□□□ 0.45
HDAC4P56524 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.85■□□□□ 0.45
HDAC4P56524 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.85■□□□□ 0.45
HDAC4P56524 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.85■□□□□ 0.45
HDAC4P56524 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.85■□□□□ 0.45
HDAC4P56524 OR7E14P-202ENST00000530490 1290 ntBASIC17.85■□□□□ 0.45
HDAC4P56524 AP002469.2-201ENST00000531724 424 ntBASIC17.85■□□□□ 0.45
HDAC4P56524 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.85■□□□□ 0.45
HDAC4P56524 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.85■□□□□ 0.45
HDAC4P56524 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.85■□□□□ 0.45
HDAC4P56524 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.85■□□□□ 0.45
HDAC4P56524 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.85■□□□□ 0.45
HDAC4P56524 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.85■□□□□ 0.45
HDAC4P56524 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.85■□□□□ 0.45
HDAC4P56524 AC006504.4-201ENST00000592118 1568 ntBASIC17.85■□□□□ 0.45
HDAC4P56524 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.85■□□□□ 0.45
HDAC4P56524 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.85■□□□□ 0.45
HDAC4P56524 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.85■□□□□ 0.45
HDAC4P56524 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.85■□□□□ 0.45
HDAC4P56524 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.85■□□□□ 0.45
HDAC4P56524 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.84■□□□□ 0.45
HDAC4P56524 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.84■□□□□ 0.45
HDAC4P56524 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.84■□□□□ 0.45
HDAC4P56524 PP7080-204ENST00000510714 601 ntTSL 3 BASIC17.84■□□□□ 0.45
HDAC4P56524 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.84■□□□□ 0.45
HDAC4P56524 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.84■□□□□ 0.45
HDAC4P56524 AL160237.2-201ENST00000556165 472 ntBASIC17.84■□□□□ 0.45
HDAC4P56524 DUX4L17-201ENST00000557360 1267 ntBASIC17.84■□□□□ 0.45
HDAC4P56524 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.84■□□□□ 0.45
HDAC4P56524 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.84■□□□□ 0.45
HDAC4P56524 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.84■□□□□ 0.45
HDAC4P56524 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.84■□□□□ 0.45
HDAC4P56524 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 AC005915.1-201ENST00000624912 2018 ntBASIC17.84■□□□□ 0.45
HDAC4P56524 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
HDAC4P56524 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
HDAC4P56524 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.84■□□□□ 0.45
HDAC4P56524 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HDAC4P56524 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HDAC4P56524 AC105020.1-201ENST00000435356 2205 ntBASIC17.83■□□□□ 0.45
HDAC4P56524 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.83■□□□□ 0.45
HDAC4P56524 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.83■□□□□ 0.45
HDAC4P56524 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
HDAC4P56524 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.83■□□□□ 0.45
HDAC4P56524 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.45
HDAC4P56524 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.83■□□□□ 0.45
HDAC4P56524 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.83■□□□□ 0.44
HDAC4P56524 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
HDAC4P56524 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HDAC4P56524 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
HDAC4P56524 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HDAC4P56524 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HDAC4P56524 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.83■□□□□ 0.44
HDAC4P56524 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.83■□□□□ 0.44
HDAC4P56524 AC073621.1-201ENST00000392730 636 ntBASIC17.83■□□□□ 0.44
HDAC4P56524 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
HDAC4P56524 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HDAC4P56524 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
HDAC4P56524 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms