Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMK1P53667 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LIMK1P53667 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
LIMK1P53667 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIMK1P53667 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
LIMK1P53667 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.84■□□□□ 0.29
LIMK1P53667 RN7SL692P-201ENST00000464677 288 ntBASIC16.84■□□□□ 0.29
LIMK1P53667 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIMK1P53667 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.84■□□□□ 0.29
LIMK1P53667 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMK1P53667 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.84■□□□□ 0.29
LIMK1P53667 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LIMK1P53667 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIMK1P53667 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMK1P53667 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMK1P53667 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.84■□□□□ 0.29
LIMK1P53667 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LIMK1P53667 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LIMK1P53667 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LIMK1P53667 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMK1P53667 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIMK1P53667 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMK1P53667 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
LIMK1P53667 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.84■□□□□ 0.29
LIMK1P53667 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIMK1P53667 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LIMK1P53667 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMK1P53667 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMK1P53667 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIMK1P53667 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LIMK1P53667 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.84■□□□□ 0.29
LIMK1P53667 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
LIMK1P53667 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMK1P53667 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMK1P53667 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMK1P53667 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMK1P53667 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
LIMK1P53667 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
LIMK1P53667 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.83■□□□□ 0.28
LIMK1P53667 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.83■□□□□ 0.28
LIMK1P53667 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMK1P53667 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC16.83■□□□□ 0.28
LIMK1P53667 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.83■□□□□ 0.28
LIMK1P53667 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMK1P53667 IGHV3-52-201ENST00000519770 353 ntBASIC16.83■□□□□ 0.28
LIMK1P53667 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.83■□□□□ 0.28
LIMK1P53667 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.83■□□□□ 0.28
LIMK1P53667 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.83■□□□□ 0.28
LIMK1P53667 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMK1P53667 AC009118.2-201ENST00000613275 655 ntBASIC16.83■□□□□ 0.28
LIMK1P53667 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
LIMK1P53667 AL645728.2-201ENST00000641974 660 ntBASIC16.83■□□□□ 0.28
LIMK1P53667 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIMK1P53667 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.82■□□□□ 0.28
LIMK1P53667 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 AL499627.1-201ENST00000569373 2188 ntBASIC16.82■□□□□ 0.28
LIMK1P53667 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.82■□□□□ 0.28
LIMK1P53667 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
LIMK1P53667 ARSEP1-201ENST00000420443 635 ntBASIC16.82■□□□□ 0.28
LIMK1P53667 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.82■□□□□ 0.28
LIMK1P53667 ACTG1P4-201ENST00000425123 1122 ntBASIC16.82■□□□□ 0.28
LIMK1P53667 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.82■□□□□ 0.28
LIMK1P53667 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.82■□□□□ 0.28
LIMK1P53667 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.82■□□□□ 0.28
LIMK1P53667 AC069120.2-201ENST00000524091 540 ntBASIC16.82■□□□□ 0.28
LIMK1P53667 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.82■□□□□ 0.28
LIMK1P53667 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LIMK1P53667 RARRES2P8-201ENST00000566335 367 ntBASIC16.82■□□□□ 0.28
LIMK1P53667 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.82■□□□□ 0.28
LIMK1P53667 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
LIMK1P53667 AC080080.1-201ENST00000625121 2420 ntBASIC16.82■□□□□ 0.28
LIMK1P53667 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC16.82■□□□□ 0.28
LIMK1P53667 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
LIMK1P53667 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 TNRC18P3-201ENST00000441896 2691 ntBASIC16.82■□□□□ 0.28
LIMK1P53667 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIMK1P53667 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
LIMK1P53667 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIMK1P53667 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
LIMK1P53667 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMK1P53667 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMK1P53667 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIMK1P53667 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIMK1P53667 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms