Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC15.66■□□□□ 0.1
MSX1P28360 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
MSX1P28360 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
MSX1P28360 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX1P28360 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX1P28360 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSX1P28360 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX1P28360 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSX1P28360 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC15.65■□□□□ 0.1
MSX1P28360 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC15.65■□□□□ 0.1
MSX1P28360 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.65■□□□□ 0.1
MSX1P28360 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX1P28360 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
MSX1P28360 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
MSX1P28360 AL645608.8-201ENST00000606034 2086 ntBASIC15.65■□□□□ 0.1
MSX1P28360 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX1P28360 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.65■□□□□ 0.1
MSX1P28360 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX1P28360 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX1P28360 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC15.65■□□□□ 0.1
MSX1P28360 AP002414.1-201ENST00000391405 1147 ntBASIC15.65■□□□□ 0.1
MSX1P28360 YBX2P1-201ENST00000394192 760 ntBASIC15.65■□□□□ 0.1
MSX1P28360 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.65■□□□□ 0.1
MSX1P28360 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC15.65■□□□□ 0.1
MSX1P28360 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.65■□□□□ 0.1
MSX1P28360 AC136632.2-201ENST00000512891 861 ntBASIC15.65■□□□□ 0.1
MSX1P28360 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
MSX1P28360 RNA5SP416-201ENST00000516838 111 ntBASIC15.65■□□□□ 0.1
MSX1P28360 UNC93B6-202ENST00000528242 690 ntBASIC15.65■□□□□ 0.1
MSX1P28360 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.65■□□□□ 0.1
MSX1P28360 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.65■□□□□ 0.1
MSX1P28360 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.65■□□□□ 0.1
MSX1P28360 AC079781.4-201ENST00000641908 219 ntBASIC15.65■□□□□ 0.1
MSX1P28360 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSX1P28360 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC15.65■□□□□ 0.1
MSX1P28360 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
MSX1P28360 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSX1P28360 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.65■□□□□ 0.1
MSX1P28360 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX1P28360 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.65■□□□□ 0.1
MSX1P28360 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSX1P28360 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.65■□□□□ 0.1
MSX1P28360 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
MSX1P28360 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSX1P28360 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
MSX1P28360 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
MSX1P28360 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX1P28360 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.64■□□□□ 0.09
MSX1P28360 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
MSX1P28360 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
MSX1P28360 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX1P28360 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC15.64■□□□□ 0.09
MSX1P28360 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
MSX1P28360 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSX1P28360 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX1P28360 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX1P28360 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSX1P28360 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSX1P28360 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSX1P28360 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.64■□□□□ 0.09
MSX1P28360 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.64■□□□□ 0.09
MSX1P28360 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.64■□□□□ 0.09
MSX1P28360 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.64■□□□□ 0.09
MSX1P28360 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.64■□□□□ 0.09
MSX1P28360 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSX1P28360 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX1P28360 AP001160.2-201ENST00000596071 487 ntBASIC15.64■□□□□ 0.09
MSX1P28360 AL805961.1-202ENST00000641562 540 ntBASIC15.64■□□□□ 0.09
MSX1P28360 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.64■□□□□ 0.09
MSX1P28360 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX1P28360 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSX1P28360 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX1P28360 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSX1P28360 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
MSX1P28360 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MSX1P28360 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
MSX1P28360 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.63■□□□□ 0.09
MSX1P28360 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
MSX1P28360 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX1P28360 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX1P28360 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
MSX1P28360 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX1P28360 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.63■□□□□ 0.09
MSX1P28360 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MSX1P28360 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX1P28360 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
MSX1P28360 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSX1P28360 AC073621.1-201ENST00000392730 636 ntBASIC15.63■□□□□ 0.09
MSX1P28360 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.63■□□□□ 0.09
MSX1P28360 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.63■□□□□ 0.09
MSX1P28360 PMS2P2-201ENST00000425039 1128 ntBASIC15.63■□□□□ 0.09
MSX1P28360 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.63■□□□□ 0.09
MSX1P28360 FIS1-203ENST00000442303 631 ntTSL 3 BASIC15.63■□□□□ 0.09
MSX1P28360 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.63■□□□□ 0.09
MSX1P28360 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms