Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 AL135999.2-201ENST00000622438 1686 ntBASIC13.06□□□□□ -0.32
HLA-DMBP28068 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 CHCHD2P8-201ENST00000429873 447 ntBASIC13.06□□□□□ -0.32
HLA-DMBP28068 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 KRT126P-201ENST00000549467 1181 ntBASIC13.06□□□□□ -0.32
HLA-DMBP28068 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 NPAP1P7-201ENST00000613027 823 ntBASIC13.06□□□□□ -0.32
HLA-DMBP28068 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC13.06□□□□□ -0.32
HLA-DMBP28068 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 KRT18P1-202ENST00000452408 1331 ntBASIC13.06□□□□□ -0.32
HLA-DMBP28068 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
HLA-DMBP28068 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC13.06□□□□□ -0.32
HLA-DMBP28068 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 ENSA-206ENST00000361631 725 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 AC103564.2-201ENST00000432853 1299 ntBASIC13.05□□□□□ -0.32
HLA-DMBP28068 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 STK19B-204ENST00000512515 211 ntBASIC13.05□□□□□ -0.32
HLA-DMBP28068 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 MIR3652-201ENST00000579335 131 ntBASIC13.05□□□□□ -0.32
HLA-DMBP28068 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 EGFEM1P-202ENST00000431685 1563 ntBASIC13.05□□□□□ -0.32
HLA-DMBP28068 STX3-203ENST00000529177 1571 ntTSL 2 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC13.05□□□□□ -0.32
HLA-DMBP28068 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
HLA-DMBP28068 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms