Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC21.2■□□□□ 0.98
COL5A3P25940 MIR1909-201ENST00000411312 80 ntBASIC21.2■□□□□ 0.98
COL5A3P25940 ARSEP1-201ENST00000420443 635 ntBASIC21.2■□□□□ 0.98
COL5A3P25940 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC21.2■□□□□ 0.98
COL5A3P25940 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL5A3P25940 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
COL5A3P25940 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL5A3P25940 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL5A3P25940 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL5A3P25940 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL5A3P25940 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL5A3P25940 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL5A3P25940 GPR53P-205ENST00000457298 1084 ntBASIC21.19■□□□□ 0.98
COL5A3P25940 AL079307.3-201ENST00000556114 283 ntBASIC21.19■□□□□ 0.98
COL5A3P25940 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COL5A3P25940 AL359881.2-201ENST00000602973 570 ntBASIC21.19■□□□□ 0.98
COL5A3P25940 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC21.19■□□□□ 0.98
COL5A3P25940 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.19■□□□□ 0.98
COL5A3P25940 GOLGA2P9-201ENST00000596977 1937 ntBASIC21.19■□□□□ 0.98
COL5A3P25940 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC21.19■□□□□ 0.98
COL5A3P25940 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC21.19■□□□□ 0.98
COL5A3P25940 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC21.19■□□□□ 0.98
COL5A3P25940 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC21.19■□□□□ 0.98
COL5A3P25940 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
COL5A3P25940 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC21.19■□□□□ 0.98
COL5A3P25940 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
COL5A3P25940 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A3P25940 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
COL5A3P25940 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A3P25940 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A3P25940 AC124947.2-201ENST00000547118 1133 ntBASIC21.18■□□□□ 0.98
COL5A3P25940 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A3P25940 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A3P25940 AC007431.3-201ENST00000623221 587 ntBASIC21.18■□□□□ 0.98
COL5A3P25940 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A3P25940 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC21.18■□□□□ 0.98
COL5A3P25940 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A3P25940 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A3P25940 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC21.18■□□□□ 0.98
COL5A3P25940 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A3P25940 SLC7A15P-201ENST00000424028 1363 ntBASIC21.18■□□□□ 0.98
COL5A3P25940 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A3P25940 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A3P25940 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
COL5A3P25940 DGCR5-201ENST00000399539 862 ntBASIC21.18■□□□□ 0.98
COL5A3P25940 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC21.18■□□□□ 0.98
COL5A3P25940 RASL12-203ENST00000434605 982 ntTSL 2 BASIC21.18■□□□□ 0.98
COL5A3P25940 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
COL5A3P25940 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC21.18■□□□□ 0.98
COL5A3P25940 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC21.18■□□□□ 0.98
COL5A3P25940 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC21.18■□□□□ 0.98
COL5A3P25940 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
COL5A3P25940 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL5A3P25940 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.17■□□□□ 0.98
COL5A3P25940 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL5A3P25940 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC21.17■□□□□ 0.98
COL5A3P25940 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
COL5A3P25940 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
COL5A3P25940 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC21.17■□□□□ 0.98
COL5A3P25940 QPRT-203ENST00000562473 579 ntTSL 3 BASIC21.17■□□□□ 0.98
COL5A3P25940 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC21.17■□□□□ 0.98
COL5A3P25940 AC132938.2-201ENST00000579188 680 ntBASIC21.17■□□□□ 0.98
COL5A3P25940 AL591163.1-201ENST00000641757 987 ntBASIC21.17■□□□□ 0.98
COL5A3P25940 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC21.17■□□□□ 0.98
COL5A3P25940 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL5A3P25940 AC138969.3-201ENST00000546612 1459 ntBASIC21.17■□□□□ 0.98
COL5A3P25940 AC138932.2-201ENST00000548268 1459 ntBASIC21.17■□□□□ 0.98
COL5A3P25940 AC126755.4-201ENST00000549796 1459 ntBASIC21.17■□□□□ 0.98
COL5A3P25940 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL5A3P25940 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.17■□□□□ 0.98
COL5A3P25940 AL391825.1-201ENST00000457671 1364 ntBASIC21.16■□□□□ 0.98
COL5A3P25940 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC21.16■□□□□ 0.98
COL5A3P25940 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL5A3P25940 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC21.16■□□□□ 0.98
COL5A3P25940 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL5A3P25940 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC21.16■□□□□ 0.98
COL5A3P25940 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC21.16■□□□□ 0.98
COL5A3P25940 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC21.16■□□□□ 0.98
COL5A3P25940 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC21.16■□□□□ 0.98
COL5A3P25940 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
COL5A3P25940 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL5A3P25940 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC21.16■□□□□ 0.98
COL5A3P25940 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
COL5A3P25940 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
COL5A3P25940 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC21.15■□□□□ 0.98
COL5A3P25940 BTBD7P1-201ENST00000447253 1453 ntBASIC21.15■□□□□ 0.98
COL5A3P25940 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
COL5A3P25940 RBM39-205ENST00000397370 612 ntTSL 2 BASIC21.15■□□□□ 0.98
COL5A3P25940 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC21.15■□□□□ 0.98
COL5A3P25940 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC21.15■□□□□ 0.98
COL5A3P25940 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
COL5A3P25940 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL5A3P25940 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC21.15■□□□□ 0.98
COL5A3P25940 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL5A3P25940 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL5A3P25940 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL5A3P25940 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
COL5A3P25940 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL5A3P25940 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL5A3P25940 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms