Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC18.89■□□□□ 0.61
TPM1P09493 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TPM1P09493 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
TPM1P09493 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 AC126755.1-201ENST00000525846 6405 ntBASIC18.88■□□□□ 0.61
TPM1P09493 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.88■□□□□ 0.61
TPM1P09493 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.88■□□□□ 0.61
TPM1P09493 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC18.88■□□□□ 0.61
TPM1P09493 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.88■□□□□ 0.61
TPM1P09493 RNF216P1-203ENST00000404404 2427 ntBASIC18.88■□□□□ 0.61
TPM1P09493 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.88■□□□□ 0.61
TPM1P09493 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.88■□□□□ 0.61
TPM1P09493 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.88■□□□□ 0.61
TPM1P09493 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.88■□□□□ 0.61
TPM1P09493 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TPM1P09493 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.88■□□□□ 0.61
TPM1P09493 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
TPM1P09493 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
TPM1P09493 AC008741.2-201ENST00000612792 3115 ntBASIC18.88■□□□□ 0.61
TPM1P09493 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.88■□□□□ 0.61
TPM1P09493 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
TPM1P09493 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TPM1P09493 ANKRD26P3-201ENST00000454044 2748 ntBASIC18.87■□□□□ 0.61
TPM1P09493 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
TPM1P09493 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
TPM1P09493 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.87■□□□□ 0.61
TPM1P09493 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
TPM1P09493 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
TPM1P09493 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 MIR662-201ENST00000384847 95 ntBASIC18.87■□□□□ 0.61
TPM1P09493 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 EGFEM1P-202ENST00000431685 1563 ntBASIC18.87■□□□□ 0.61
TPM1P09493 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 SLC25A3P1-201ENST00000443844 931 ntBASIC18.87■□□□□ 0.61
TPM1P09493 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.87■□□□□ 0.61
TPM1P09493 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC18.87■□□□□ 0.61
TPM1P09493 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.87■□□□□ 0.61
TPM1P09493 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.87■□□□□ 0.61
TPM1P09493 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC18.87■□□□□ 0.61
TPM1P09493 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
TPM1P09493 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM1P09493 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM1P09493 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC18.86■□□□□ 0.61
TPM1P09493 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC18.86■□□□□ 0.61
TPM1P09493 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM1P09493 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.86■□□□□ 0.61
TPM1P09493 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM1P09493 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM1P09493 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TPM1P09493 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC18.86■□□□□ 0.61
TPM1P09493 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM1P09493 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM1P09493 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
TPM1P09493 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.86■□□□□ 0.61
TPM1P09493 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
TPM1P09493 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.86■□□□□ 0.61
TPM1P09493 AC019129.2-201ENST00000609837 1235 ntBASIC18.86■□□□□ 0.61
TPM1P09493 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM1P09493 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM1P09493 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM1P09493 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
TPM1P09493 AC079328.2-201ENST00000561241 3354 ntBASIC18.86■□□□□ 0.61
TPM1P09493 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.86■□□□□ 0.61
TPM1P09493 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
TPM1P09493 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.86■□□□□ 0.61
TPM1P09493 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms