Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MBD4O95243 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MBD4O95243 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MBD4O95243 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MBD4O95243 AC092919.2-201ENST00000623631 1645 ntBASIC20.31■□□□□ 0.84
MBD4O95243 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MBD4O95243 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MBD4O95243 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
MBD4O95243 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC20.31■□□□□ 0.84
MBD4O95243 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MBD4O95243 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC20.31■□□□□ 0.84
MBD4O95243 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC20.31■□□□□ 0.84
MBD4O95243 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC20.31■□□□□ 0.84
MBD4O95243 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC20.31■□□□□ 0.84
MBD4O95243 BSG-214ENST00000614867 960 ntTSL 3 BASIC20.31■□□□□ 0.84
MBD4O95243 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
MBD4O95243 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MBD4O95243 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
MBD4O95243 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
MBD4O95243 TOP3BP1-201ENST00000420768 1380 ntBASIC20.31■□□□□ 0.84
MBD4O95243 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MBD4O95243 LETM1P2-201ENST00000597330 2178 ntBASIC20.31■□□□□ 0.84
MBD4O95243 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
MBD4O95243 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MBD4O95243 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC20.3■□□□□ 0.84
MBD4O95243 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
MBD4O95243 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MBD4O95243 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MBD4O95243 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MBD4O95243 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MBD4O95243 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
MBD4O95243 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
MBD4O95243 SLC22A20-204ENST00000530038 1673 ntBASIC20.3■□□□□ 0.84
MBD4O95243 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC20.3■□□□□ 0.84
MBD4O95243 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.3■□□□□ 0.84
MBD4O95243 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
MBD4O95243 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MBD4O95243 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MBD4O95243 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
MBD4O95243 AC074386.1-202ENST00000463561 864 ntBASIC20.3■□□□□ 0.84
MBD4O95243 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.3■□□□□ 0.84
MBD4O95243 RPL28-209ENST00000560055 670 ntTSL 3 BASIC20.3■□□□□ 0.84
MBD4O95243 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MBD4O95243 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC20.3■□□□□ 0.84
MBD4O95243 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC20.3■□□□□ 0.84
MBD4O95243 MED16-214ENST00000617672 554 ntTSL 5 BASIC20.3■□□□□ 0.84
MBD4O95243 AC055717.3-201ENST00000622967 595 ntBASIC20.3■□□□□ 0.84
MBD4O95243 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC20.3■□□□□ 0.84
MBD4O95243 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MBD4O95243 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MBD4O95243 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MBD4O95243 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MBD4O95243 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC20.3■□□□□ 0.84
MBD4O95243 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
MBD4O95243 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MBD4O95243 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MBD4O95243 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.29■□□□□ 0.84
MBD4O95243 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MBD4O95243 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MBD4O95243 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.29■□□□□ 0.84
MBD4O95243 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.29■□□□□ 0.84
MBD4O95243 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MBD4O95243 AC060834.1-201ENST00000443027 2032 ntBASIC20.29■□□□□ 0.84
MBD4O95243 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.29■□□□□ 0.84
MBD4O95243 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
MBD4O95243 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
MBD4O95243 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC20.29■□□□□ 0.84
MBD4O95243 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC20.29■□□□□ 0.84
MBD4O95243 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MBD4O95243 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MBD4O95243 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC20.29■□□□□ 0.84
MBD4O95243 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC20.29■□□□□ 0.84
MBD4O95243 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MBD4O95243 AC005412.3-201ENST00000580309 715 ntBASIC20.29■□□□□ 0.84
MBD4O95243 GPALPP1-207ENST00000611650 899 ntBASIC20.29■□□□□ 0.84
MBD4O95243 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
MBD4O95243 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MBD4O95243 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
MBD4O95243 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MBD4O95243 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MBD4O95243 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MBD4O95243 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC20.29■□□□□ 0.84
MBD4O95243 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MBD4O95243 HARS-204ENST00000438307 1789 ntTSL 2 BASIC20.29■□□□□ 0.84
MBD4O95243 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.28■□□□□ 0.84
MBD4O95243 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MBD4O95243 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MBD4O95243 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.28■□□□□ 0.84
MBD4O95243 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MBD4O95243 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC20.28■□□□□ 0.84
MBD4O95243 KRT8P49-201ENST00000604166 1432 ntBASIC20.28■□□□□ 0.84
MBD4O95243 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
MBD4O95243 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MBD4O95243 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MBD4O95243 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC20.28■□□□□ 0.84
MBD4O95243 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
MBD4O95243 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.28■□□□□ 0.84
MBD4O95243 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MBD4O95243 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
MBD4O95243 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms