Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SDC3O75056 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
SDC3O75056 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.66■□□□□ 0.26
SDC3O75056 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SDC3O75056 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
SDC3O75056 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.66■□□□□ 0.26
SDC3O75056 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.66■□□□□ 0.26
SDC3O75056 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.66■□□□□ 0.26
SDC3O75056 BCRP1-201ENST00000444246 691 ntBASIC16.66■□□□□ 0.26
SDC3O75056 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.66■□□□□ 0.26
SDC3O75056 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.66■□□□□ 0.26
SDC3O75056 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.66■□□□□ 0.26
SDC3O75056 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.66■□□□□ 0.26
SDC3O75056 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SDC3O75056 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.66■□□□□ 0.26
SDC3O75056 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.66■□□□□ 0.26
SDC3O75056 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.65■□□□□ 0.26
SDC3O75056 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.65■□□□□ 0.26
SDC3O75056 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.65■□□□□ 0.26
SDC3O75056 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.65■□□□□ 0.26
SDC3O75056 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 AL592309.1-201ENST00000443127 649 ntBASIC16.65■□□□□ 0.26
SDC3O75056 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 AC079140.1-201ENST00000508039 487 ntBASIC16.65■□□□□ 0.26
SDC3O75056 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.65■□□□□ 0.26
SDC3O75056 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
SDC3O75056 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
SDC3O75056 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC16.65■□□□□ 0.26
SDC3O75056 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SDC3O75056 AC005498.2-205ENST00000593218 784 ntBASIC16.65■□□□□ 0.26
SDC3O75056 AC009093.7-201ENST00000623853 1223 ntBASIC16.65■□□□□ 0.26
SDC3O75056 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.65■□□□□ 0.26
SDC3O75056 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
SDC3O75056 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SDC3O75056 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
SDC3O75056 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.65■□□□□ 0.26
SDC3O75056 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SDC3O75056 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
SDC3O75056 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.65■□□□□ 0.26
SDC3O75056 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.65■□□□□ 0.26
SDC3O75056 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.65■□□□□ 0.26
SDC3O75056 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
SDC3O75056 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC16.65■□□□□ 0.26
SDC3O75056 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SDC3O75056 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.64■□□□□ 0.26
SDC3O75056 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 OR6D1P-202ENST00000641007 5290 ntBASIC16.64■□□□□ 0.25
SDC3O75056 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
SDC3O75056 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.64■□□□□ 0.25
SDC3O75056 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
SDC3O75056 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC16.64■□□□□ 0.25
SDC3O75056 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
SDC3O75056 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.64■□□□□ 0.25
SDC3O75056 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.64■□□□□ 0.25
SDC3O75056 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.64■□□□□ 0.25
SDC3O75056 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SDC3O75056 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms