Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.1■□□□□ 0.33
SHOX2O60902 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC17.1■□□□□ 0.33
SHOX2O60902 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.1■□□□□ 0.33
SHOX2O60902 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SHOX2O60902 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 RPPH1-201ENST00000516869 333 ntBASIC17.1■□□□□ 0.33
SHOX2O60902 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.1■□□□□ 0.33
SHOX2O60902 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.1■□□□□ 0.33
SHOX2O60902 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.1■□□□□ 0.33
SHOX2O60902 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.1■□□□□ 0.33
SHOX2O60902 AC104581.4-201ENST00000623126 3052 ntBASIC17.1■□□□□ 0.33
SHOX2O60902 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.1■□□□□ 0.33
SHOX2O60902 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC17.1■□□□□ 0.33
SHOX2O60902 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC17.1■□□□□ 0.33
SHOX2O60902 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.1■□□□□ 0.33
SHOX2O60902 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SHOX2O60902 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SHOX2O60902 AC112504.1-201ENST00000623415 1841 ntBASIC17.1■□□□□ 0.33
SHOX2O60902 CROCCP1-201ENST00000426910 5675 ntBASIC17.1■□□□□ 0.33
SHOX2O60902 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SHOX2O60902 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 R3HDM2P2-201ENST00000401880 2116 ntBASIC17.09■□□□□ 0.33
SHOX2O60902 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC17.09■□□□□ 0.33
SHOX2O60902 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC17.09■□□□□ 0.33
SHOX2O60902 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SHOX2O60902 AL359258.3-201ENST00000622910 2331 ntBASIC17.09■□□□□ 0.33
SHOX2O60902 CICP4-201ENST00000447359 2812 ntBASIC17.09■□□□□ 0.33
SHOX2O60902 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC17.09■□□□□ 0.33
SHOX2O60902 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.09■□□□□ 0.33
SHOX2O60902 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.09■□□□□ 0.33
SHOX2O60902 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.09■□□□□ 0.33
SHOX2O60902 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.09■□□□□ 0.33
SHOX2O60902 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.09■□□□□ 0.33
SHOX2O60902 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
SHOX2O60902 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.09■□□□□ 0.33
SHOX2O60902 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
SHOX2O60902 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHOX2O60902 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SHOX2O60902 OR6D1P-203ENST00000641209 4860 ntBASIC17.08■□□□□ 0.33
SHOX2O60902 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SHOX2O60902 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
SHOX2O60902 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17.08■□□□□ 0.33
SHOX2O60902 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC17.08■□□□□ 0.33
SHOX2O60902 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SHOX2O60902 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
SHOX2O60902 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
SHOX2O60902 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC17.08■□□□□ 0.33
SHOX2O60902 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHOX2O60902 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.08■□□□□ 0.32
SHOX2O60902 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.08■□□□□ 0.32
SHOX2O60902 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.08■□□□□ 0.32
SHOX2O60902 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHOX2O60902 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SHOX2O60902 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHOX2O60902 MYCLP1-201ENST00000372451 1075 ntBASIC17.08■□□□□ 0.32
SHOX2O60902 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHOX2O60902 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17.08■□□□□ 0.32
SHOX2O60902 AL353807.1-201ENST00000427475 662 ntBASIC17.08■□□□□ 0.32
SHOX2O60902 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SHOX2O60902 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
SHOX2O60902 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.08■□□□□ 0.32
SHOX2O60902 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.08■□□□□ 0.32
SHOX2O60902 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms