Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP1O15259 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
NPHP1O15259 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC21.48■■□□□ 1.03
NPHP1O15259 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP1O15259 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC21.48■■□□□ 1.03
NPHP1O15259 MNT-208ENST00000575394 606 ntTSL 4 BASIC21.48■■□□□ 1.03
NPHP1O15259 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC21.48■■□□□ 1.03
NPHP1O15259 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP1O15259 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP1O15259 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC21.48■■□□□ 1.03
NPHP1O15259 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP1O15259 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP1O15259 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
NPHP1O15259 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC21.48■■□□□ 1.03
NPHP1O15259 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP1O15259 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
NPHP1O15259 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP1O15259 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC21.47■■□□□ 1.03
NPHP1O15259 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP1O15259 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP1O15259 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC21.47■■□□□ 1.03
NPHP1O15259 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP1O15259 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC21.47■■□□□ 1.03
NPHP1O15259 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC21.47■■□□□ 1.03
NPHP1O15259 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC21.47■■□□□ 1.03
NPHP1O15259 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP1O15259 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP1O15259 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP1O15259 HNRNPA1P40-201ENST00000426371 1278 ntBASIC21.47■■□□□ 1.03
NPHP1O15259 TAF8-206ENST00000472818 719 ntTSL 2 BASIC21.47■■□□□ 1.03
NPHP1O15259 IGHV3-62-201ENST00000520057 340 ntBASIC21.47■■□□□ 1.03
NPHP1O15259 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP1O15259 AQP6-203ENST00000551733 849 ntTSL 3 BASIC21.47■■□□□ 1.03
NPHP1O15259 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC21.47■■□□□ 1.03
NPHP1O15259 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP1O15259 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC21.47■■□□□ 1.03
NPHP1O15259 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP1O15259 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP1O15259 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP1O15259 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP1O15259 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP1O15259 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
NPHP1O15259 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC21.46■■□□□ 1.03
NPHP1O15259 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
NPHP1O15259 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP1O15259 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP1O15259 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC21.46■■□□□ 1.03
NPHP1O15259 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP1O15259 NFIC-211ENST00000641145 8399 ntBASIC21.46■■□□□ 1.03
NPHP1O15259 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP1O15259 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP1O15259 FLJ13224-201ENST00000313737 1514 ntBASIC21.46■■□□□ 1.03
NPHP1O15259 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP1O15259 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC21.46■■□□□ 1.03
NPHP1O15259 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC21.46■■□□□ 1.03
NPHP1O15259 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP1O15259 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP1O15259 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC21.46■■□□□ 1.03
NPHP1O15259 MIR943-201ENST00000401286 94 ntBASIC21.46■■□□□ 1.03
NPHP1O15259 PNKD-204ENST00000436005 978 ntTSL 5 BASIC21.46■■□□□ 1.03
NPHP1O15259 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC21.46■■□□□ 1.03
NPHP1O15259 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC21.46■■□□□ 1.03
NPHP1O15259 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP1O15259 AL135744.1-201ENST00000565098 629 ntBASIC21.46■■□□□ 1.03
NPHP1O15259 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP1O15259 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
NPHP1O15259 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
NPHP1O15259 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP1O15259 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP1O15259 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC21.46■■□□□ 1.03
NPHP1O15259 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC21.46■■□□□ 1.03
NPHP1O15259 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.46■■□□□ 1.03
NPHP1O15259 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP1O15259 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP1O15259 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP1O15259 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC21.46■■□□□ 1.03
NPHP1O15259 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC21.46■■□□□ 1.03
NPHP1O15259 HARS-203ENST00000431330 1774 ntTSL 2 BASIC21.46■■□□□ 1.03
NPHP1O15259 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
NPHP1O15259 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.45■■□□□ 1.03
NPHP1O15259 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC21.45■■□□□ 1.03
NPHP1O15259 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
NPHP1O15259 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
NPHP1O15259 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC21.45■■□□□ 1.02
NPHP1O15259 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC21.45■■□□□ 1.02
NPHP1O15259 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC21.45■■□□□ 1.02
NPHP1O15259 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC21.45■■□□□ 1.02
NPHP1O15259 AC069335.1-201ENST00000489972 472 ntBASIC21.45■■□□□ 1.02
NPHP1O15259 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NPHP1O15259 RARRES2P8-201ENST00000566335 367 ntBASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms