Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 UXT-AS1-201ENST00000590504 1525 ntBASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
PCDHGA1Q9Y5H4 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 FZD10-202ENST00000539839 3282 ntBASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 AC106820.2-201ENST00000563775 3264 ntBASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 WIZP1-201ENST00000531444 2299 ntBASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 CR383656.12-201ENST00000549567 513 ntBASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 AL390754.1-201ENST00000619088 582 ntBASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.37■□□□□ 0.21
PCDHGA1Q9Y5H4 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PCDHGA1Q9Y5H4 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.35■□□□□ 0.21
PCDHGA1Q9Y5H4 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.35■□□□□ 0.21
PCDHGA1Q9Y5H4 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.35■□□□□ 0.21
PCDHGA1Q9Y5H4 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PCDHGA1Q9Y5H4 FLJ13224-201ENST00000313737 1514 ntBASIC16.35■□□□□ 0.21
PCDHGA1Q9Y5H4 AC012569.1-201ENST00000591191 1524 ntBASIC16.35■□□□□ 0.21
PCDHGA1Q9Y5H4 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms