Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC21.7■■□□□ 1.06
SCN11AQ9UI33 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC21.7■■□□□ 1.06
SCN11AQ9UI33 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
SCN11AQ9UI33 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SCN11AQ9UI33 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SCN11AQ9UI33 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC21.7■■□□□ 1.06
SCN11AQ9UI33 SNX33P1-201ENST00000592116 1762 ntBASIC21.7■■□□□ 1.06
SCN11AQ9UI33 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SCN11AQ9UI33 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC21.7■■□□□ 1.06
SCN11AQ9UI33 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 TDG-209ENST00000544861 1387 ntTSL 2 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 CD276-203ENST00000537340 2439 ntTSL 2 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 COPE-202ENST00000349893 948 ntTSL 2 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 HNRNPA1P40-201ENST00000426371 1278 ntBASIC21.69■■□□□ 1.06
SCN11AQ9UI33 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 POLD4-211ENST00000539074 714 ntTSL 3 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 AC013467.2-201ENST00000605472 835 ntBASIC21.69■■□□□ 1.06
SCN11AQ9UI33 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 GSAP-205ENST00000430584 600 ntTSL 5 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 KRT18P34-201ENST00000488218 1270 ntBASIC21.69■■□□□ 1.06
SCN11AQ9UI33 IGHV3-42-201ENST00000520410 361 ntBASIC21.69■■□□□ 1.06
SCN11AQ9UI33 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 MPDU1-223ENST00000582151 728 ntBASIC21.69■■□□□ 1.06
SCN11AQ9UI33 AC073592.8-201ENST00000624126 511 ntBASIC21.69■■□□□ 1.06
SCN11AQ9UI33 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SCN11AQ9UI33 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 FST-202ENST00000396947 2538 ntTSL 5 BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 CRB3P1-201ENST00000449338 276 ntBASIC21.68■■□□□ 1.06
SCN11AQ9UI33 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 RARRES2P9-201ENST00000565168 469 ntBASIC21.68■■□□□ 1.06
SCN11AQ9UI33 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 AL138828.2-201ENST00000615812 383 ntBASIC21.68■■□□□ 1.06
SCN11AQ9UI33 AL590560.3-201ENST00000623350 461 ntBASIC21.68■■□□□ 1.06
SCN11AQ9UI33 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SCN11AQ9UI33 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SCN11AQ9UI33 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC21.67■■□□□ 1.06
SCN11AQ9UI33 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SCN11AQ9UI33 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SCN11AQ9UI33 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
SCN11AQ9UI33 AC241585.1-201ENST00000433527 519 ntBASIC21.67■■□□□ 1.06
SCN11AQ9UI33 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
SCN11AQ9UI33 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
SCN11AQ9UI33 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SCN11AQ9UI33 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
SCN11AQ9UI33 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.67■■□□□ 1.06
SCN11AQ9UI33 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SCN11AQ9UI33 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC21.67■■□□□ 1.06
SCN11AQ9UI33 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC21.67■■□□□ 1.06
SCN11AQ9UI33 AC068880.1-201ENST00000507289 2297 ntBASIC21.67■■□□□ 1.06
SCN11AQ9UI33 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SCN11AQ9UI33 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SCN11AQ9UI33 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC21.67■■□□□ 1.06
SCN11AQ9UI33 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 WDR53-204ENST00000433160 887 ntTSL 5 BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 LINC02560-201ENST00000596379 459 ntBASIC21.66■■□□□ 1.06
SCN11AQ9UI33 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms