Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 AL845331.1-201ENST00000424978 1190 ntBASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 AC007967.3-201ENST00000434308 558 ntBASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 TSSC2-201ENST00000450217 709 ntBASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 AL138831.2-201ENST00000606564 490 ntBASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 AC068418.2-201ENST00000577309 3703 ntBASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.84■□□□□ 0.77
CCDC39Q9UFE4 CYP2T1P-202ENST00000641596 2535 ntBASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 KRT18P1-202ENST00000452408 1331 ntBASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 BANP-201ENST00000286122 2368 ntTSL 5 BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 AC002558.1-201ENST00000488906 803 ntBASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 AC005336.2-201ENST00000593183 939 ntBASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.83■□□□□ 0.77
CCDC39Q9UFE4 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC39Q9UFE4 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC39Q9UFE4 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC39Q9UFE4 HYMAI-201ENST00000635591 3347 ntBASIC19.83■□□□□ 0.76
CCDC39Q9UFE4 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.83■□□□□ 0.76
CCDC39Q9UFE4 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC39Q9UFE4 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC39Q9UFE4 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CCDC39Q9UFE4 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC19.83■□□□□ 0.76
CCDC39Q9UFE4 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
CCDC39Q9UFE4 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms