Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CUEDC1Q9NWM3 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CUEDC1Q9NWM3 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CUEDC1Q9NWM3 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.57■□□□□ 0.24
CUEDC1Q9NWM3 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CUEDC1Q9NWM3 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CUEDC1Q9NWM3 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
CUEDC1Q9NWM3 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CUEDC1Q9NWM3 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CUEDC1Q9NWM3 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CUEDC1Q9NWM3 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CUEDC1Q9NWM3 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.57■□□□□ 0.24
CUEDC1Q9NWM3 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CUEDC1Q9NWM3 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 AP002414.3-201ENST00000589352 1468 ntBASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 LINC02084-201ENST00000606069 1096 ntBASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 AC008735.5-201ENST00000623544 497 ntBASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 PKD1P1-201ENST00000458669 6805 ntBASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CUEDC1Q9NWM3 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 AC073621.1-201ENST00000392730 636 ntBASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 KRT18P27-201ENST00000427733 1299 ntBASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 AC006557.2-201ENST00000592985 1240 ntBASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 AL355385.1-201ENST00000606123 409 ntBASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CUEDC1Q9NWM3 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CUEDC1Q9NWM3 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CUEDC1Q9NWM3 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CUEDC1Q9NWM3 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
CUEDC1Q9NWM3 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CUEDC1Q9NWM3 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CUEDC1Q9NWM3 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CUEDC1Q9NWM3 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.54■□□□□ 0.24
CUEDC1Q9NWM3 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CUEDC1Q9NWM3 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CUEDC1Q9NWM3 AC060834.1-201ENST00000443027 2032 ntBASIC16.54■□□□□ 0.24
CUEDC1Q9NWM3 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CUEDC1Q9NWM3 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CUEDC1Q9NWM3 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.54■□□□□ 0.24
CUEDC1Q9NWM3 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.54■□□□□ 0.24
CUEDC1Q9NWM3 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms