Protein–RNA interactions for Protein: Q9BXA9

SALL3, Sal-like protein 3, humanhuman

Predictions only

Length 1,300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SALL3Q9BXA9 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 AC005593.1-201ENST00000624894 515 ntBASIC20.68■□□□□ 0.9
SALL3Q9BXA9 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
SALL3Q9BXA9 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 AL671710.1-201ENST00000610245 2349 ntBASIC20.67■□□□□ 0.9
SALL3Q9BXA9 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 HLA-J-202ENST00000469281 1241 ntBASIC20.67■□□□□ 0.9
SALL3Q9BXA9 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 POLD4-207ENST00000531239 584 ntTSL 2 BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 AC006538.1-201ENST00000567905 1585 ntBASIC20.67■□□□□ 0.9
SALL3Q9BXA9 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SALL3Q9BXA9 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC20.66■□□□□ 0.9
SALL3Q9BXA9 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 MRPL20P1-201ENST00000400819 433 ntBASIC20.65■□□□□ 0.9
SALL3Q9BXA9 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 AC108751.1-201ENST00000490852 363 ntBASIC20.65■□□□□ 0.9
SALL3Q9BXA9 RNA5SP415-201ENST00000517246 115 ntBASIC20.65■□□□□ 0.9
SALL3Q9BXA9 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 AC010654.1-201ENST00000615722 808 ntBASIC20.65■□□□□ 0.9
SALL3Q9BXA9 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 AC129492.6-201ENST00000611383 1305 ntBASIC20.65■□□□□ 0.9
SALL3Q9BXA9 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 AC131009.4-201ENST00000624048 1740 ntBASIC20.65■□□□□ 0.9
SALL3Q9BXA9 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SALL3Q9BXA9 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC20.64■□□□□ 0.9
SALL3Q9BXA9 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SALL3Q9BXA9 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SALL3Q9BXA9 GCK-202ENST00000345378 2421 ntTSL 2 BASIC20.64■□□□□ 0.9
SALL3Q9BXA9 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
SALL3Q9BXA9 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
SALL3Q9BXA9 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC20.64■□□□□ 0.89
SALL3Q9BXA9 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
SALL3Q9BXA9 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SALL3Q9BXA9 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms