Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 AC093503.3-201ENST00000624917 2352 ntBASIC22.38■■□□□ 1.17
ABCA3Q99758 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA3Q99758 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC22.37■■□□□ 1.17
ABCA3Q99758 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA3Q99758 HIST1H2BPS3-201ENST00000419683 341 ntBASIC22.37■■□□□ 1.17
ABCA3Q99758 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC22.37■■□□□ 1.17
ABCA3Q99758 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC22.37■■□□□ 1.17
ABCA3Q99758 AC023310.3-201ENST00000557027 670 ntBASIC22.37■■□□□ 1.17
ABCA3Q99758 AC044860.1-202ENST00000559481 777 ntBASIC22.37■■□□□ 1.17
ABCA3Q99758 AC100756.1-201ENST00000562736 682 ntBASIC22.37■■□□□ 1.17
ABCA3Q99758 AC138749.3-201ENST00000567691 622 ntBASIC22.37■■□□□ 1.17
ABCA3Q99758 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA3Q99758 AC116165.1-201ENST00000611806 668 ntBASIC22.37■■□□□ 1.17
ABCA3Q99758 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC22.37■■□□□ 1.17
ABCA3Q99758 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA3Q99758 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA3Q99758 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC22.37■■□□□ 1.17
ABCA3Q99758 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA3Q99758 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA3Q99758 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC22.37■■□□□ 1.17
ABCA3Q99758 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
ABCA3Q99758 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA3Q99758 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA3Q99758 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA3Q99758 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC22.37■■□□□ 1.17
ABCA3Q99758 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC22.37■■□□□ 1.17
ABCA3Q99758 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC22.37■■□□□ 1.17
ABCA3Q99758 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC22.37■■□□□ 1.17
ABCA3Q99758 FUZ-207ENST00000526575 482 ntTSL 4 BASIC22.37■■□□□ 1.17
ABCA3Q99758 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
ABCA3Q99758 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
ABCA3Q99758 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC22.36■■□□□ 1.17
ABCA3Q99758 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
ABCA3Q99758 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
ABCA3Q99758 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
ABCA3Q99758 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC22.36■■□□□ 1.17
ABCA3Q99758 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
ABCA3Q99758 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC22.36■■□□□ 1.17
ABCA3Q99758 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC22.36■■□□□ 1.17
ABCA3Q99758 RN7SL752P-201ENST00000463779 287 ntBASIC22.36■■□□□ 1.17
ABCA3Q99758 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC22.36■■□□□ 1.17
ABCA3Q99758 ELK1P1-201ENST00000485699 580 ntBASIC22.36■■□□□ 1.17
ABCA3Q99758 5S_rRNA.22-201ENST00000614916 106 ntBASIC22.36■■□□□ 1.17
ABCA3Q99758 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC22.36■■□□□ 1.17
ABCA3Q99758 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC22.36■■□□□ 1.17
ABCA3Q99758 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC22.36■■□□□ 1.17
ABCA3Q99758 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
ABCA3Q99758 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
ABCA3Q99758 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
ABCA3Q99758 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC22.36■■□□□ 1.17
ABCA3Q99758 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC22.36■■□□□ 1.17
ABCA3Q99758 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
ABCA3Q99758 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
ABCA3Q99758 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC22.35■■□□□ 1.17
ABCA3Q99758 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC22.35■■□□□ 1.17
ABCA3Q99758 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC22.35■■□□□ 1.17
ABCA3Q99758 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC22.35■■□□□ 1.17
ABCA3Q99758 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC22.35■■□□□ 1.17
ABCA3Q99758 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
ABCA3Q99758 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
ABCA3Q99758 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC22.35■■□□□ 1.17
ABCA3Q99758 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
ABCA3Q99758 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
ABCA3Q99758 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
ABCA3Q99758 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC22.35■■□□□ 1.17
ABCA3Q99758 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC22.35■■□□□ 1.17
ABCA3Q99758 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC22.35■■□□□ 1.17
ABCA3Q99758 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
ABCA3Q99758 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
ABCA3Q99758 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC22.35■■□□□ 1.17
ABCA3Q99758 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC22.35■■□□□ 1.17
ABCA3Q99758 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
ABCA3Q99758 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
ABCA3Q99758 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
ABCA3Q99758 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
ABCA3Q99758 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
ABCA3Q99758 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
ABCA3Q99758 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
ABCA3Q99758 AL589987.1-201ENST00000453380 819 ntBASIC22.34■■□□□ 1.17
ABCA3Q99758 FTH1-202ENST00000526640 786 ntTSL 2 BASIC22.34■■□□□ 1.17
ABCA3Q99758 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC22.34■■□□□ 1.17
ABCA3Q99758 QPRT-203ENST00000562473 579 ntTSL 3 BASIC22.34■■□□□ 1.17
ABCA3Q99758 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC22.34■■□□□ 1.17
ABCA3Q99758 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC22.34■■□□□ 1.17
ABCA3Q99758 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC22.34■■□□□ 1.17
ABCA3Q99758 FRMD8P1-201ENST00000440433 1524 ntBASIC22.34■■□□□ 1.17
ABCA3Q99758 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
ABCA3Q99758 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
ABCA3Q99758 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
ABCA3Q99758 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
ABCA3Q99758 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC22.34■■□□□ 1.17
ABCA3Q99758 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
ABCA3Q99758 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC22.34■■□□□ 1.17
ABCA3Q99758 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
ABCA3Q99758 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
ABCA3Q99758 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC22.34■■□□□ 1.17
ABCA3Q99758 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
ABCA3Q99758 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC22.34■■□□□ 1.17
ABCA3Q99758 DOC2GP-202ENST00000514950 1163 ntBASIC22.34■■□□□ 1.17
ABCA3Q99758 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC22.34■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms