Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL12A1Q99715 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL12A1Q99715 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC14.76□□□□□ -0.05
COL12A1Q99715 REXO1L9P-201ENST00000604264 2108 ntBASIC14.76□□□□□ -0.05
COL12A1Q99715 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC14.75□□□□□ -0.05
COL12A1Q99715 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.75□□□□□ -0.05
COL12A1Q99715 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC14.75□□□□□ -0.05
COL12A1Q99715 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.75□□□□□ -0.05
COL12A1Q99715 DUTP2-201ENST00000519164 463 ntBASIC14.75□□□□□ -0.05
COL12A1Q99715 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC14.75□□□□□ -0.05
COL12A1Q99715 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC14.75□□□□□ -0.05
COL12A1Q99715 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.75□□□□□ -0.05
COL12A1Q99715 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 AL020996.1-203ENST00000536896 2307 ntBASIC14.75□□□□□ -0.05
COL12A1Q99715 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.75□□□□□ -0.05
COL12A1Q99715 GPAA1P2-201ENST00000417923 928 ntBASIC14.75□□□□□ -0.05
COL12A1Q99715 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
COL12A1Q99715 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
COL12A1Q99715 NARF-206ENST00000457415 1668 ntTSL 5 BASIC14.75□□□□□ -0.05
COL12A1Q99715 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
COL12A1Q99715 HMGA1P7-201ENST00000406908 502 ntBASIC14.74□□□□□ -0.05
COL12A1Q99715 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC14.74□□□□□ -0.05
COL12A1Q99715 AL080243.2-201ENST00000418783 582 ntBASIC14.74□□□□□ -0.05
COL12A1Q99715 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC14.74□□□□□ -0.05
COL12A1Q99715 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC14.74□□□□□ -0.05
COL12A1Q99715 MIR4515-201ENST00000584082 81 ntBASIC14.74□□□□□ -0.05
COL12A1Q99715 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
COL12A1Q99715 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC14.74□□□□□ -0.05
COL12A1Q99715 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
COL12A1Q99715 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
COL12A1Q99715 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC14.74□□□□□ -0.05
COL12A1Q99715 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC14.74□□□□□ -0.05
COL12A1Q99715 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC14.74□□□□□ -0.05
COL12A1Q99715 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC14.74□□□□□ -0.05
COL12A1Q99715 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.74□□□□□ -0.05
COL12A1Q99715 RN7SL219P-201ENST00000582872 296 ntBASIC14.74□□□□□ -0.05
COL12A1Q99715 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.74□□□□□ -0.05
COL12A1Q99715 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.74□□□□□ -0.05
COL12A1Q99715 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.74□□□□□ -0.05
COL12A1Q99715 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
COL12A1Q99715 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 AC120498.9-201ENST00000339021 3867 ntBASIC14.74□□□□□ -0.05
COL12A1Q99715 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC14.74□□□□□ -0.05
COL12A1Q99715 FOXO1B-201ENST00000504678 1527 ntBASIC14.74□□□□□ -0.05
COL12A1Q99715 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC14.74□□□□□ -0.05
COL12A1Q99715 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC14.74□□□□□ -0.05
COL12A1Q99715 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC14.74□□□□□ -0.05
COL12A1Q99715 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC14.74□□□□□ -0.05
COL12A1Q99715 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC14.74□□□□□ -0.05
COL12A1Q99715 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
COL12A1Q99715 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC14.74□□□□□ -0.05
COL12A1Q99715 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC14.74□□□□□ -0.05
COL12A1Q99715 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.74□□□□□ -0.05
COL12A1Q99715 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC14.74□□□□□ -0.05
COL12A1Q99715 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
COL12A1Q99715 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL12A1Q99715 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
COL12A1Q99715 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL12A1Q99715 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC14.73□□□□□ -0.05
COL12A1Q99715 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL12A1Q99715 AC016027.1-202ENST00000607927 1699 ntBASIC14.73□□□□□ -0.05
COL12A1Q99715 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL12A1Q99715 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.73□□□□□ -0.05
COL12A1Q99715 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC14.73□□□□□ -0.05
COL12A1Q99715 MIR1247-201ENST00000408206 136 ntBASIC14.73□□□□□ -0.05
COL12A1Q99715 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms