Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP28Q96RU2 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP28Q96RU2 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
USP28Q96RU2 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP28Q96RU2 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
USP28Q96RU2 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.56■□□□□ 0.72
USP28Q96RU2 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
USP28Q96RU2 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
USP28Q96RU2 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
USP28Q96RU2 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
USP28Q96RU2 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 AP002414.1-201ENST00000391405 1147 ntBASIC19.55■□□□□ 0.72
USP28Q96RU2 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.55■□□□□ 0.72
USP28Q96RU2 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.55■□□□□ 0.72
USP28Q96RU2 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
USP28Q96RU2 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.55■□□□□ 0.72
USP28Q96RU2 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.55■□□□□ 0.72
USP28Q96RU2 S100A2-206ENST00000497140 697 ntTSL 2 BASIC19.55■□□□□ 0.72
USP28Q96RU2 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.55■□□□□ 0.72
USP28Q96RU2 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC19.55■□□□□ 0.72
USP28Q96RU2 AC138894.3-201ENST00000603787 634 ntBASIC19.55■□□□□ 0.72
USP28Q96RU2 AL591684.3-201ENST00000605187 298 ntBASIC19.55■□□□□ 0.72
USP28Q96RU2 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.55■□□□□ 0.72
USP28Q96RU2 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
USP28Q96RU2 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
USP28Q96RU2 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
USP28Q96RU2 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP28Q96RU2 AL391256.1-201ENST00000443260 1855 ntBASIC19.54■□□□□ 0.72
USP28Q96RU2 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.54■□□□□ 0.72
USP28Q96RU2 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
USP28Q96RU2 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP28Q96RU2 AP005117.1-201ENST00000584346 1413 ntBASIC19.54■□□□□ 0.72
USP28Q96RU2 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP28Q96RU2 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
USP28Q96RU2 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.54■□□□□ 0.72
USP28Q96RU2 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
USP28Q96RU2 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP28Q96RU2 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
USP28Q96RU2 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.54■□□□□ 0.72
USP28Q96RU2 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.54■□□□□ 0.72
USP28Q96RU2 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.54■□□□□ 0.72
USP28Q96RU2 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
USP28Q96RU2 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.54■□□□□ 0.72
USP28Q96RU2 AC091076.1-201ENST00000610741 619 ntBASIC19.54■□□□□ 0.72
USP28Q96RU2 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.54■□□□□ 0.72
USP28Q96RU2 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
USP28Q96RU2 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP28Q96RU2 AC006449.5-201ENST00000610658 2098 ntBASIC19.54■□□□□ 0.72
USP28Q96RU2 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.54■□□□□ 0.72
USP28Q96RU2 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP28Q96RU2 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19.54■□□□□ 0.72
USP28Q96RU2 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP28Q96RU2 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
USP28Q96RU2 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP28Q96RU2 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP28Q96RU2 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
USP28Q96RU2 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.54■□□□□ 0.72
USP28Q96RU2 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.53■□□□□ 0.72
USP28Q96RU2 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP28Q96RU2 TUBB8P12-201ENST00000308911 1335 ntBASIC19.53■□□□□ 0.72
USP28Q96RU2 TUBB7P-202ENST00000428444 1305 ntBASIC19.53■□□□□ 0.72
USP28Q96RU2 TUBB8P7-204ENST00000567960 1332 ntBASIC19.53■□□□□ 0.72
USP28Q96RU2 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP28Q96RU2 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP28Q96RU2 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP28Q96RU2 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP28Q96RU2 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
USP28Q96RU2 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.53■□□□□ 0.72
USP28Q96RU2 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
USP28Q96RU2 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC19.53■□□□□ 0.72
USP28Q96RU2 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
USP28Q96RU2 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP28Q96RU2 AC132008.2-207ENST00000454517 770 ntBASIC19.53■□□□□ 0.72
USP28Q96RU2 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.53■□□□□ 0.72
USP28Q96RU2 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.53■□□□□ 0.72
USP28Q96RU2 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.53■□□□□ 0.72
USP28Q96RU2 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.53■□□□□ 0.72
USP28Q96RU2 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
USP28Q96RU2 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.53■□□□□ 0.72
USP28Q96RU2 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.53■□□□□ 0.72
USP28Q96RU2 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
USP28Q96RU2 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms