Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
LINC00643Q86TS7 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
LINC00643Q86TS7 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
LINC00643Q86TS7 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.71
LINC00643Q86TS7 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
LINC00643Q86TS7 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
LINC00643Q86TS7 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
LINC00643Q86TS7 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
LINC00643Q86TS7 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.71
LINC00643Q86TS7 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.71
LINC00643Q86TS7 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC10.65□□□□□ -0.71
LINC00643Q86TS7 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 HLA-A-202ENST00000376806 1854 ntBASIC10.64□□□□□ -0.71
LINC00643Q86TS7 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 PTCHD3P2-201ENST00000424937 1205 ntBASIC10.64□□□□□ -0.71
LINC00643Q86TS7 CASP6-205ENST00000505486 538 ntTSL 4 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 DUTP2-201ENST00000519164 463 ntBASIC10.64□□□□□ -0.71
LINC00643Q86TS7 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 AC092053.1-201ENST00000605787 1936 ntBASIC10.64□□□□□ -0.71
LINC00643Q86TS7 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
LINC00643Q86TS7 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 AL596087.1-201ENST00000400979 1969 ntBASIC10.63□□□□□ -0.71
LINC00643Q86TS7 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 ALOX12P2-203ENST00000570921 1945 ntBASIC10.63□□□□□ -0.71
LINC00643Q86TS7 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 SNX3-202ENST00000349379 890 ntTSL 2 BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
LINC00643Q86TS7 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC10.63□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms