Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 AC046185.3-201ENST00000623228 1824 ntBASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.22
PPP4R4Q6NUP7 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 AP000550.4-202ENST00000639755 178 ntBASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 RNF216P1-203ENST00000404404 2427 ntBASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.45■□□□□ 0.22
PPP4R4Q6NUP7 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 AC078925.2-201ENST00000624013 1973 ntBASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 LINC00554-201ENST00000564841 3011 ntBASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 LYSMD4-203ENST00000378904 2122 ntBASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 DDX43P3-201ENST00000441064 443 ntBASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 FAM86EP-206ENST00000510506 987 ntBASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 HYMAI.1-201ENST00000620949 238 ntBASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
PPP4R4Q6NUP7 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PPP4R4Q6NUP7 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PPP4R4Q6NUP7 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PPP4R4Q6NUP7 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms