Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RPSAP43-201ENST00000402237 625 ntBASIC15.68■□□□□ 0.1
MSX1P28360 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.68■□□□□ 0.1
MSX1P28360 GPX1P2-201ENST00000429271 606 ntBASIC15.68■□□□□ 0.1
MSX1P28360 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC15.68■□□□□ 0.1
MSX1P28360 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.68■□□□□ 0.1
MSX1P28360 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC15.68■□□□□ 0.1
MSX1P28360 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.68■□□□□ 0.1
MSX1P28360 AC105339.3-201ENST00000560043 636 ntBASIC15.68■□□□□ 0.1
MSX1P28360 AC040169.1-201ENST00000565382 521 ntBASIC15.68■□□□□ 0.1
MSX1P28360 AC010327.4-202ENST00000591484 748 ntBASIC15.68■□□□□ 0.1
MSX1P28360 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC15.68■□□□□ 0.1
MSX1P28360 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC15.68■□□□□ 0.1
MSX1P28360 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
MSX1P28360 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC15.68■□□□□ 0.1
MSX1P28360 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 LINC02012-201ENST00000608206 1725 ntBASIC15.68■□□□□ 0.1
MSX1P28360 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC15.68■□□□□ 0.1
MSX1P28360 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
MSX1P28360 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
MSX1P28360 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
MSX1P28360 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX1P28360 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.67■□□□□ 0.1
MSX1P28360 AC139713.2-201ENST00000641328 2723 ntBASIC15.67■□□□□ 0.1
MSX1P28360 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX1P28360 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX1P28360 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSX1P28360 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
MSX1P28360 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.67■□□□□ 0.1
MSX1P28360 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSX1P28360 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
MSX1P28360 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSX1P28360 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC15.67■□□□□ 0.1
MSX1P28360 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.67■□□□□ 0.1
MSX1P28360 DNAJB3-201ENST00000446806 729 ntBASIC15.67■□□□□ 0.1
MSX1P28360 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC15.67■□□□□ 0.1
MSX1P28360 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.67■□□□□ 0.1
MSX1P28360 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
MSX1P28360 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC15.67■□□□□ 0.1
MSX1P28360 MIR1199-201ENST00000621445 119 ntBASIC15.67■□□□□ 0.1
MSX1P28360 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.67■□□□□ 0.1
MSX1P28360 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.67■□□□□ 0.1
MSX1P28360 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSX1P28360 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
MSX1P28360 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSX1P28360 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.67■□□□□ 0.1
MSX1P28360 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX1P28360 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX1P28360 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX1P28360 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
MSX1P28360 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX1P28360 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSX1P28360 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX1P28360 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX1P28360 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.67■□□□□ 0.1
MSX1P28360 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.67■□□□□ 0.1
MSX1P28360 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSX1P28360 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
MSX1P28360 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX1P28360 FER1L4-210ENST00000615531 5998 ntBASIC15.66■□□□□ 0.1
MSX1P28360 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC15.66■□□□□ 0.1
MSX1P28360 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.66■□□□□ 0.1
MSX1P28360 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 STK33P1-201ENST00000423835 1218 ntBASIC15.66■□□□□ 0.1
MSX1P28360 KRT18P27-201ENST00000427733 1299 ntBASIC15.66■□□□□ 0.1
MSX1P28360 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.66■□□□□ 0.1
MSX1P28360 AC124947.2-201ENST00000547118 1133 ntBASIC15.66■□□□□ 0.1
MSX1P28360 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC15.66■□□□□ 0.1
MSX1P28360 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC15.66■□□□□ 0.1
MSX1P28360 ETFA-208ENST00000559602 792 ntTSL 3 BASIC15.66■□□□□ 0.1
MSX1P28360 MIR3687-2-201ENST00000577708 61 ntBASIC15.66■□□□□ 0.1
MSX1P28360 MIR3687-1-201ENST00000614492 61 ntBASIC15.66■□□□□ 0.1
MSX1P28360 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
MSX1P28360 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
MSX1P28360 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC15.66■□□□□ 0.1
MSX1P28360 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.66■□□□□ 0.1
MSX1P28360 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.66■□□□□ 0.1
MSX1P28360 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC15.66■□□□□ 0.1
MSX1P28360 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSX1P28360 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms