Protein–RNA interactions for Protein: P13378

HOXD8, Homeobox protein Hox-D8, humanhuman

Predicted RBP Predictions only

Length 290 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD8P13378 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HOXD8P13378 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
HOXD8P13378 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXD8P13378 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.7■□□□□ 0.58
HOXD8P13378 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.7■□□□□ 0.58
HOXD8P13378 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXD8P13378 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HOXD8P13378 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.7■□□□□ 0.58
HOXD8P13378 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXD8P13378 AC108860.2-201ENST00000562760 2183 ntBASIC18.69■□□□□ 0.58
HOXD8P13378 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXD8P13378 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXD8P13378 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXD8P13378 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
HOXD8P13378 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXD8P13378 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXD8P13378 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXD8P13378 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.69■□□□□ 0.58
HOXD8P13378 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC18.69■□□□□ 0.58
HOXD8P13378 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
HOXD8P13378 SPDYE7P-202ENST00000420373 878 ntBASIC18.69■□□□□ 0.58
HOXD8P13378 AC107890.1-201ENST00000422478 521 ntBASIC18.69■□□□□ 0.58
HOXD8P13378 AC142381.1-201ENST00000426099 345 ntBASIC18.69■□□□□ 0.58
HOXD8P13378 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC18.69■□□□□ 0.58
HOXD8P13378 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXD8P13378 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HOXD8P13378 ALG1L8P-201ENST00000533887 760 ntBASIC18.69■□□□□ 0.58
HOXD8P13378 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.69■□□□□ 0.58
HOXD8P13378 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.69■□□□□ 0.58
HOXD8P13378 AC073389.1-201ENST00000595595 795 ntBASIC18.69■□□□□ 0.58
HOXD8P13378 NKG7-205ENST00000600427 520 ntTSL 3 BASIC18.69■□□□□ 0.58
HOXD8P13378 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXD8P13378 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXD8P13378 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXD8P13378 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXD8P13378 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXD8P13378 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
HOXD8P13378 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXD8P13378 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
HOXD8P13378 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXD8P13378 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.69■□□□□ 0.58
HOXD8P13378 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXD8P13378 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXD8P13378 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.69■□□□□ 0.58
HOXD8P13378 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
HOXD8P13378 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXD8P13378 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXD8P13378 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
HOXD8P13378 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXD8P13378 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC18.68■□□□□ 0.58
HOXD8P13378 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXD8P13378 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXD8P13378 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXD8P13378 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXD8P13378 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXD8P13378 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.68■□□□□ 0.58
HOXD8P13378 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXD8P13378 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXD8P13378 CD81-202ENST00000381036 880 ntTSL 3 BASIC18.68■□□□□ 0.58
HOXD8P13378 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC18.68■□□□□ 0.58
HOXD8P13378 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.68■□□□□ 0.58
HOXD8P13378 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.68■□□□□ 0.58
HOXD8P13378 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.68■□□□□ 0.58
HOXD8P13378 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC18.68■□□□□ 0.58
HOXD8P13378 AL138918.1-201ENST00000568306 659 ntBASIC18.68■□□□□ 0.58
HOXD8P13378 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXD8P13378 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC18.68■□□□□ 0.58
HOXD8P13378 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.68■□□□□ 0.58
HOXD8P13378 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.68■□□□□ 0.58
HOXD8P13378 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
HOXD8P13378 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.68■□□□□ 0.58
HOXD8P13378 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXD8P13378 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXD8P13378 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC18.68■□□□□ 0.58
HOXD8P13378 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.68■□□□□ 0.58
HOXD8P13378 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXD8P13378 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXD8P13378 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXD8P13378 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
HOXD8P13378 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
HOXD8P13378 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXD8P13378 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.67■□□□□ 0.58
HOXD8P13378 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXD8P13378 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXD8P13378 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXD8P13378 KLK8-202ENST00000320838 456 ntTSL 5 BASIC18.67■□□□□ 0.58
HOXD8P13378 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXD8P13378 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC18.67■□□□□ 0.58
HOXD8P13378 AC125807.1-201ENST00000483097 614 ntBASIC18.67■□□□□ 0.58
HOXD8P13378 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXD8P13378 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.67■□□□□ 0.58
HOXD8P13378 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.67■□□□□ 0.58
HOXD8P13378 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC18.67■□□□□ 0.58
HOXD8P13378 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXD8P13378 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXD8P13378 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXD8P13378 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXD8P13378 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
HOXD8P13378 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HOXD8P13378 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms