Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
VIMP08670 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VIMP08670 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
VIMP08670 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC17.24■□□□□ 0.35
VIMP08670 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
VIMP08670 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
VIMP08670 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 AL135905.2-201ENST00000584934 1404 ntBASIC17.24■□□□□ 0.35
VIMP08670 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.24■□□□□ 0.35
VIMP08670 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.24■□□□□ 0.35
VIMP08670 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.24■□□□□ 0.35
VIMP08670 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
VIMP08670 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
VIMP08670 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.24■□□□□ 0.35
VIMP08670 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC17.24■□□□□ 0.35
VIMP08670 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
VIMP08670 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
VIMP08670 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC17.24■□□□□ 0.35
VIMP08670 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.24■□□□□ 0.35
VIMP08670 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
VIMP08670 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
VIMP08670 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VIMP08670 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.24■□□□□ 0.35
VIMP08670 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VIMP08670 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
VIMP08670 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
VIMP08670 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VIMP08670 HLA-A-202ENST00000376806 1854 ntBASIC17.23■□□□□ 0.35
VIMP08670 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VIMP08670 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC17.23■□□□□ 0.35
VIMP08670 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
VIMP08670 ING5-213ENST00000636051 4199 ntTSL 5 BASIC17.23■□□□□ 0.35
VIMP08670 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VIMP08670 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VIMP08670 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VIMP08670 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.23■□□□□ 0.35
VIMP08670 AC116562.2-201ENST00000507042 360 ntBASIC17.23■□□□□ 0.35
VIMP08670 AC113404.2-201ENST00000507884 177 ntBASIC17.23■□□□□ 0.35
VIMP08670 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
VIMP08670 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.23■□□□□ 0.35
VIMP08670 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.23■□□□□ 0.35
VIMP08670 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.23■□□□□ 0.35
VIMP08670 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VIMP08670 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VIMP08670 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VIMP08670 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
VIMP08670 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.23■□□□□ 0.35
VIMP08670 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.23■□□□□ 0.35
VIMP08670 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VIMP08670 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC17.23■□□□□ 0.35
VIMP08670 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
VIMP08670 AP002414.2-201ENST00000591780 3365 ntBASIC17.23■□□□□ 0.35
VIMP08670 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VIMP08670 AC104640.1-201ENST00000562617 2109 ntBASIC17.23■□□□□ 0.35
VIMP08670 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VIMP08670 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.22■□□□□ 0.35
VIMP08670 AC092384.3-202ENST00000564646 2873 ntBASIC17.22■□□□□ 0.35
VIMP08670 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.22■□□□□ 0.35
VIMP08670 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
VIMP08670 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 ALOX12P2-203ENST00000570921 1945 ntBASIC17.22■□□□□ 0.35
VIMP08670 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.22■□□□□ 0.35
VIMP08670 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
VIMP08670 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms