Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
HLA-DQA1P01909 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 MED29-202ENST00000594368 1471 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 SERF2-207ENST00000409614 582 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 AC004951.3-201ENST00000418645 1148 ntBASIC12.91□□□□□ -0.34
HLA-DQA1P01909 AL158047.1-201ENST00000445918 881 ntBASIC12.91□□□□□ -0.34
HLA-DQA1P01909 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 KRT16P5-201ENST00000455284 522 ntBASIC12.91□□□□□ -0.34
HLA-DQA1P01909 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 RPPH1-201ENST00000516869 333 ntBASIC12.91□□□□□ -0.34
HLA-DQA1P01909 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 OR2I1P-209ENST00000641730 5365 ntBASIC12.91□□□□□ -0.34
HLA-DQA1P01909 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 SBF1P1-201ENST00000444527 5631 ntBASIC12.91□□□□□ -0.34
HLA-DQA1P01909 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
HLA-DQA1P01909 AC022532.1-201ENST00000624563 1728 ntBASIC12.91□□□□□ -0.34
HLA-DQA1P01909 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 SLC9A7P1-201ENST00000554295 3311 ntBASIC12.9□□□□□ -0.34
HLA-DQA1P01909 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
HLA-DQA1P01909 AC005104.2-201ENST00000427818 678 ntBASIC12.9□□□□□ -0.34
HLA-DQA1P01909 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms