Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.43■□□□□ 0.22
SEMA3DO95025 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.43■□□□□ 0.22
SEMA3DO95025 AL022326.1-202ENST00000641533 845 ntBASIC16.43■□□□□ 0.22
SEMA3DO95025 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
SEMA3DO95025 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
SEMA3DO95025 CICP6-201ENST00000457191 2729 ntBASIC16.43■□□□□ 0.22
SEMA3DO95025 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.43■□□□□ 0.22
SEMA3DO95025 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SEMA3DO95025 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.42■□□□□ 0.22
SEMA3DO95025 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 AC097637.2-201ENST00000624096 1997 ntBASIC16.42■□□□□ 0.22
SEMA3DO95025 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
SEMA3DO95025 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.42■□□□□ 0.22
SEMA3DO95025 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
SEMA3DO95025 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SEMA3DO95025 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SEMA3DO95025 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.42■□□□□ 0.22
SEMA3DO95025 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.42■□□□□ 0.22
SEMA3DO95025 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.42■□□□□ 0.22
SEMA3DO95025 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.42■□□□□ 0.22
SEMA3DO95025 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
SEMA3DO95025 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.42■□□□□ 0.22
SEMA3DO95025 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.42■□□□□ 0.22
SEMA3DO95025 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.42■□□□□ 0.22
SEMA3DO95025 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 AL355877.3-201ENST00000622820 899 ntBASIC16.42■□□□□ 0.22
SEMA3DO95025 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
SEMA3DO95025 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SEMA3DO95025 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
SEMA3DO95025 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.42■□□□□ 0.22
SEMA3DO95025 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SEMA3DO95025 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
SEMA3DO95025 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SEMA3DO95025 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.41■□□□□ 0.22
SEMA3DO95025 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.41■□□□□ 0.22
SEMA3DO95025 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 AC092053.1-201ENST00000605787 1936 ntBASIC16.41■□□□□ 0.22
SEMA3DO95025 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.41■□□□□ 0.22
SEMA3DO95025 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
SEMA3DO95025 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SEMA3DO95025 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SEMA3DO95025 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
SEMA3DO95025 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 LINC00982-205ENST00000420957 435 ntBASIC16.41■□□□□ 0.22
SEMA3DO95025 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.41■□□□□ 0.22
SEMA3DO95025 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.41■□□□□ 0.22
SEMA3DO95025 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.41■□□□□ 0.22
SEMA3DO95025 REXO1L6P-202ENST00000619970 1078 ntBASIC16.41■□□□□ 0.22
SEMA3DO95025 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.41■□□□□ 0.22
SEMA3DO95025 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.41■□□□□ 0.22
SEMA3DO95025 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
SEMA3DO95025 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.41■□□□□ 0.22
SEMA3DO95025 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SEMA3DO95025 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SEMA3DO95025 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms