Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
SDC3O75056 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
SDC3O75056 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDC3O75056 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SDC3O75056 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDC3O75056 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDC3O75056 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.69■□□□□ 0.26
SDC3O75056 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
SDC3O75056 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
SDC3O75056 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.69■□□□□ 0.26
SDC3O75056 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.69■□□□□ 0.26
SDC3O75056 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.69■□□□□ 0.26
SDC3O75056 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.69■□□□□ 0.26
SDC3O75056 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.69■□□□□ 0.26
SDC3O75056 AC005237.2-201ENST00000434368 219 ntBASIC16.69■□□□□ 0.26
SDC3O75056 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SDC3O75056 SPDYE11-202ENST00000450699 704 ntBASIC16.69■□□□□ 0.26
SDC3O75056 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
SDC3O75056 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC16.69■□□□□ 0.26
SDC3O75056 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.69■□□□□ 0.26
SDC3O75056 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.69■□□□□ 0.26
SDC3O75056 SPDYE9P-201ENST00000570642 692 ntBASIC16.69■□□□□ 0.26
SDC3O75056 SPDYE10P-202ENST00000612005 668 ntBASIC16.69■□□□□ 0.26
SDC3O75056 SPDYE8P-202ENST00000612377 668 ntBASIC16.69■□□□□ 0.26
SDC3O75056 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDC3O75056 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.69■□□□□ 0.26
SDC3O75056 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
SDC3O75056 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
SDC3O75056 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SDC3O75056 PCDHB18P-201ENST00000524813 2368 ntBASIC16.69■□□□□ 0.26
SDC3O75056 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
SDC3O75056 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SDC3O75056 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
SDC3O75056 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDC3O75056 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SDC3O75056 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDC3O75056 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDC3O75056 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDC3O75056 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDC3O75056 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDC3O75056 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.68■□□□□ 0.26
SDC3O75056 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDC3O75056 AL627223.1-201ENST00000416693 442 ntBASIC16.68■□□□□ 0.26
SDC3O75056 AC140658.5-201ENST00000438532 169 ntBASIC16.68■□□□□ 0.26
SDC3O75056 FAM86GP-201ENST00000448322 971 ntBASIC16.68■□□□□ 0.26
SDC3O75056 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.68■□□□□ 0.26
SDC3O75056 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.68■□□□□ 0.26
SDC3O75056 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SDC3O75056 SPCS2P1-201ENST00000561636 679 ntBASIC16.68■□□□□ 0.26
SDC3O75056 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.68■□□□□ 0.26
SDC3O75056 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.68■□□□□ 0.26
SDC3O75056 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.68■□□□□ 0.26
SDC3O75056 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SDC3O75056 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.68■□□□□ 0.26
SDC3O75056 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.68■□□□□ 0.26
SDC3O75056 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDC3O75056 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SDC3O75056 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
SDC3O75056 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
SDC3O75056 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.68■□□□□ 0.26
SDC3O75056 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SDC3O75056 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.68■□□□□ 0.26
SDC3O75056 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.68■□□□□ 0.26
SDC3O75056 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.68■□□□□ 0.26
SDC3O75056 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
SDC3O75056 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
SDC3O75056 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SDC3O75056 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDC3O75056 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SDC3O75056 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SDC3O75056 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
SDC3O75056 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
SDC3O75056 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDC3O75056 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDC3O75056 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.67■□□□□ 0.26
SDC3O75056 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDC3O75056 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
SDC3O75056 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDC3O75056 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDC3O75056 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
SDC3O75056 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.67■□□□□ 0.26
SDC3O75056 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.67■□□□□ 0.26
SDC3O75056 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.67■□□□□ 0.26
SDC3O75056 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.67■□□□□ 0.26
SDC3O75056 AL645728.2-201ENST00000641974 660 ntBASIC16.67■□□□□ 0.26
SDC3O75056 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
SDC3O75056 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDC3O75056 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SDC3O75056 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.67■□□□□ 0.26
SDC3O75056 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDC3O75056 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SDC3O75056 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SDC3O75056 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
SDC3O75056 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.66■□□□□ 0.26
SDC3O75056 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.66■□□□□ 0.26
SDC3O75056 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SDC3O75056 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms