Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 VENTXP7-201ENST00000475503 772 ntBASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 AC005915.1-201ENST00000624912 2018 ntBASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
CCDC39Q9UFE4 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 AC010460.3-201ENST00000511359 1579 ntBASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 AC007950.2-201ENST00000615045 2347 ntBASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 AC016734.2-201ENST00000624325 1377 ntBASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 AC246785.2-201ENST00000432512 513 ntBASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
CCDC39Q9UFE4 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 MYB-242ENST00000618728 3545 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 AC125634.1-201ENST00000438758 1403 ntBASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 IER3-202ENST00000376377 1350 ntBASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CCDC39Q9UFE4 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC19.85■□□□□ 0.77
CCDC39Q9UFE4 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms