Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AL805961.1-202ENST00000641562 540 ntBASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS54Q9P1Q0 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 RPS2P28-201ENST00000314255 741 ntBASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 AC116407.3-201ENST00000623905 1129 ntBASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 AC117500.6-201ENST00000624871 588 ntBASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 PI4KAP1-204ENST00000612579 1703 ntBASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 AD000864.1-201ENST00000624076 2295 ntBASIC19.71■□□□□ 0.75
VPS54Q9P1Q0 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 DUX4L17-201ENST00000557360 1267 ntBASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 TERC-201ENST00000602385 541 ntBASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 MIR1199-201ENST00000621445 119 ntBASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS54Q9P1Q0 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 AC026396.1-201ENST00000419388 421 ntBASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 PAWRP1-201ENST00000451083 565 ntBASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS54Q9P1Q0 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms