Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 AC243562.1-201ENST00000560672 389 ntBASIC17.55■□□□□ 0.4
TDP1Q9NUW8 AL135744.1-201ENST00000565098 629 ntBASIC17.55■□□□□ 0.4
TDP1Q9NUW8 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 AC009093.7-201ENST00000623853 1223 ntBASIC17.55■□□□□ 0.4
TDP1Q9NUW8 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 NOC2LP1-202ENST00000452600 2235 ntBASIC17.55■□□□□ 0.4
TDP1Q9NUW8 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TDP1Q9NUW8 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 HCG4-201ENST00000418983 998 ntBASIC17.54■□□□□ 0.4
TDP1Q9NUW8 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 DUX4L17-201ENST00000557360 1267 ntBASIC17.54■□□□□ 0.4
TDP1Q9NUW8 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 AL009183.1-201ENST00000603760 355 ntBASIC17.54■□□□□ 0.4
TDP1Q9NUW8 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TDP1Q9NUW8 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 TOP3BP1-201ENST00000420768 1380 ntBASIC17.53■□□□□ 0.4
TDP1Q9NUW8 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 AC093512.1-201ENST00000617969 520 ntBASIC17.53■□□□□ 0.4
TDP1Q9NUW8 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TDP1Q9NUW8 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TDP1Q9NUW8 AC109635.5-201ENST00000533593 962 ntBASIC17.52■□□□□ 0.4
TDP1Q9NUW8 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms