Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
ZNF541Q9H0D2 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 KRT17P8-201ENST00000540749 863 ntBASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 AC008494.3-201ENST00000606615 944 ntBASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 TNXA-203ENST00000507684 2038 ntBASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
ZNF541Q9H0D2 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 DFFBP1-201ENST00000433250 979 ntBASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 MTND6P24-201ENST00000440466 518 ntBASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 AC092658.1-201ENST00000505836 891 ntBASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 AC135586.1-201ENST00000539323 574 ntBASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 CHCHD2P3-201ENST00000603038 451 ntBASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
ZNF541Q9H0D2 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 CETN4P-206ENST00000642099 2168 ntBASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 AC022210.1-201ENST00000449856 793 ntBASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 AL589739.1-201ENST00000607720 493 ntBASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 LINC01451-201ENST00000623792 534 ntBASIC20.26■□□□□ 0.83
ZNF541Q9H0D2 TOP3BP1-201ENST00000420768 1380 ntBASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.25■□□□□ 0.83
ZNF541Q9H0D2 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms