Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC009336.1-201ENST00000608941 1553 ntBASIC18.51■□□□□ 0.55
CCDC42Q96M95 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CCDC42Q96M95 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
CCDC42Q96M95 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CCDC42Q96M95 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CCDC42Q96M95 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC42Q96M95 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.51■□□□□ 0.55
CCDC42Q96M95 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC42Q96M95 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC42Q96M95 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC42Q96M95 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC42Q96M95 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC42Q96M95 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC42Q96M95 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC42Q96M95 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
CCDC42Q96M95 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC42Q96M95 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 AL845331.1-201ENST00000424978 1190 ntBASIC18.5■□□□□ 0.55
CCDC42Q96M95 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC42Q96M95 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC42Q96M95 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 AL662844.4-201ENST00000606367 2838 ntBASIC18.49■□□□□ 0.55
CCDC42Q96M95 AC008741.2-201ENST00000612792 3115 ntBASIC18.49■□□□□ 0.55
CCDC42Q96M95 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCDC42Q96M95 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.49■□□□□ 0.55
CCDC42Q96M95 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms