Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 PI4KAP1-204ENST00000612579 1703 ntBASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 CRYGEP-201ENST00000412192 528 ntBASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 AC087163.2-201ENST00000457299 853 ntBASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
NKX2-3Q8TAU0 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 PRSS29P-201ENST00000440800 595 ntBASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 PCDHA12-202ENST00000613593 2588 ntBASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NKX2-3Q8TAU0 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 CD82-202ENST00000342935 967 ntTSL 5 BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 AC107918.2-201ENST00000530817 355 ntBASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 LTB4R2-202ENST00000528054 3092 ntBASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NKX2-3Q8TAU0 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 HCG4B-203ENST00000450128 991 ntBASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC20.16■□□□□ 0.82
NKX2-3Q8TAU0 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms