Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 AC004706.3-202ENST00000621574 984 ntBASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 SIGLEC16-201ENST00000599858 1437 ntBASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SH3RF1Q7Z6J0 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 WBP2-203ENST00000433525 928 ntTSL 2 BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 BCRP1-201ENST00000444246 691 ntBASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 AC011676.5-201ENST00000624864 2660 ntBASIC19.57■□□□□ 0.72
SH3RF1Q7Z6J0 LINC02012-201ENST00000608206 1725 ntBASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SH3RF1Q7Z6J0 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 AL353593.2-201ENST00000602529 1483 ntBASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 AC103564.2-201ENST00000432853 1299 ntBASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms