Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTR9Q6PD62 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTR9Q6PD62 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTR9Q6PD62 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTR9Q6PD62 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTR9Q6PD62 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.29■□□□□ 0.84
CTR9Q6PD62 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTR9Q6PD62 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTR9Q6PD62 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTR9Q6PD62 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC20.29■□□□□ 0.84
CTR9Q6PD62 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
CTR9Q6PD62 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTR9Q6PD62 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CTR9Q6PD62 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTR9Q6PD62 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTR9Q6PD62 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CTR9Q6PD62 FIS1-203ENST00000442303 631 ntTSL 3 BASIC20.29■□□□□ 0.84
CTR9Q6PD62 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTR9Q6PD62 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTR9Q6PD62 AC107918.2-201ENST00000530817 355 ntBASIC20.29■□□□□ 0.84
CTR9Q6PD62 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTR9Q6PD62 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC20.29■□□□□ 0.84
CTR9Q6PD62 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC20.29■□□□□ 0.84
CTR9Q6PD62 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC20.29■□□□□ 0.84
CTR9Q6PD62 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC20.29■□□□□ 0.84
CTR9Q6PD62 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTR9Q6PD62 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.29■□□□□ 0.84
CTR9Q6PD62 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CTR9Q6PD62 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CTR9Q6PD62 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.29■□□□□ 0.84
CTR9Q6PD62 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC20.28■□□□□ 0.84
CTR9Q6PD62 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CTR9Q6PD62 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CTR9Q6PD62 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CTR9Q6PD62 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.28■□□□□ 0.84
CTR9Q6PD62 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC20.28■□□□□ 0.84
CTR9Q6PD62 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTR9Q6PD62 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTR9Q6PD62 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.28■□□□□ 0.84
CTR9Q6PD62 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CTR9Q6PD62 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTR9Q6PD62 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTR9Q6PD62 RPSAP43-201ENST00000402237 625 ntBASIC20.28■□□□□ 0.84
CTR9Q6PD62 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC20.28■□□□□ 0.84
CTR9Q6PD62 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC20.28■□□□□ 0.84
CTR9Q6PD62 AC112482.1-201ENST00000492080 688 ntBASIC20.28■□□□□ 0.84
CTR9Q6PD62 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC20.28■□□□□ 0.84
CTR9Q6PD62 AC139530.3-201ENST00000620344 690 ntBASIC20.28■□□□□ 0.84
CTR9Q6PD62 HOTTIP_1.1-201ENST00000620415 57 ntBASIC20.28■□□□□ 0.84
CTR9Q6PD62 REXO1L3P-201ENST00000622202 1288 ntBASIC20.28■□□□□ 0.84
CTR9Q6PD62 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTR9Q6PD62 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTR9Q6PD62 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CTR9Q6PD62 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTR9Q6PD62 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTR9Q6PD62 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTR9Q6PD62 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC20.28■□□□□ 0.84
CTR9Q6PD62 AC106820.2-201ENST00000563775 3264 ntBASIC20.28■□□□□ 0.84
CTR9Q6PD62 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CTR9Q6PD62 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.27■□□□□ 0.84
CTR9Q6PD62 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CTR9Q6PD62 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTR9Q6PD62 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTR9Q6PD62 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTR9Q6PD62 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTR9Q6PD62 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.27■□□□□ 0.84
CTR9Q6PD62 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTR9Q6PD62 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTR9Q6PD62 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTR9Q6PD62 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTR9Q6PD62 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTR9Q6PD62 UPF3AP3-201ENST00000420996 769 ntBASIC20.27■□□□□ 0.84
CTR9Q6PD62 MCCD1P2-201ENST00000423228 335 ntBASIC20.27■□□□□ 0.84
CTR9Q6PD62 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC20.27■□□□□ 0.84
CTR9Q6PD62 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CTR9Q6PD62 CD63-210ENST00000550776 870 ntTSL 5 BASIC20.27■□□□□ 0.84
CTR9Q6PD62 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC20.27■□□□□ 0.84
CTR9Q6PD62 KRT19P2-202ENST00000557173 1012 ntBASIC20.27■□□□□ 0.84
CTR9Q6PD62 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20.27■□□□□ 0.84
CTR9Q6PD62 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CTR9Q6PD62 AC010327.4-202ENST00000591484 748 ntBASIC20.27■□□□□ 0.84
CTR9Q6PD62 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC20.27■□□□□ 0.84
CTR9Q6PD62 GPALPP1-207ENST00000611650 899 ntBASIC20.27■□□□□ 0.84
CTR9Q6PD62 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CTR9Q6PD62 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.27■□□□□ 0.84
CTR9Q6PD62 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.27■□□□□ 0.84
CTR9Q6PD62 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTR9Q6PD62 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CTR9Q6PD62 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CTR9Q6PD62 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CTR9Q6PD62 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
CTR9Q6PD62 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CTR9Q6PD62 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.27■□□□□ 0.83
CTR9Q6PD62 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC20.27■□□□□ 0.83
CTR9Q6PD62 AC025580.3-201ENST00000617932 1424 ntBASIC20.27■□□□□ 0.83
CTR9Q6PD62 BCAR1-209ENST00000546196 1340 ntBASIC20.27■□□□□ 0.83
CTR9Q6PD62 AC129492.6-201ENST00000611383 1305 ntBASIC20.27■□□□□ 0.83
CTR9Q6PD62 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
CTR9Q6PD62 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CTR9Q6PD62 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms