Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 AC009949.1-201ENST00000623048 1830 ntBASIC16.49■□□□□ 0.23
PPP4R4Q6NUP7 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PPP4R4Q6NUP7 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
PPP4R4Q6NUP7 IER3-202ENST00000376377 1350 ntBASIC16.49■□□□□ 0.23
PPP4R4Q6NUP7 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PPP4R4Q6NUP7 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PPP4R4Q6NUP7 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PPP4R4Q6NUP7 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.49■□□□□ 0.23
PPP4R4Q6NUP7 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
PPP4R4Q6NUP7 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PPP4R4Q6NUP7 AC007950.2-201ENST00000615045 2347 ntBASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 AL391807.1-203ENST00000604392 2365 ntBASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 HBZP1-201ENST00000354915 429 ntBASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 AL645929.1-201ENST00000420084 975 ntBASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
PPP4R4Q6NUP7 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 AL513523.2-202ENST00000427283 2040 ntBASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 UPK3BP1-201ENST00000428678 509 ntBASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 AC091076.1-201ENST00000610741 619 ntBASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 AC079602.3-201ENST00000623931 403 ntBASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
PPP4R4Q6NUP7 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 AC005332.1-201ENST00000577698 1310 ntBASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.46■□□□□ 0.23
PPP4R4Q6NUP7 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms