Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 AC055876.3-201ENST00000431496 288 ntBASIC16.48■□□□□ 0.23
COL28A1Q2UY09 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 UGT1A2P-201ENST00000454886 866 ntBASIC16.48■□□□□ 0.23
COL28A1Q2UY09 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 AC096734.2-201ENST00000562054 433 ntBASIC16.48■□□□□ 0.23
COL28A1Q2UY09 AC015911.4-201ENST00000588022 1070 ntBASIC16.48■□□□□ 0.23
COL28A1Q2UY09 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 AC138649.4-201ENST00000612222 287 ntBASIC16.48■□□□□ 0.23
COL28A1Q2UY09 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 AC067852.2-201ENST00000590513 2313 ntBASIC16.48■□□□□ 0.23
COL28A1Q2UY09 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL28A1Q2UY09 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 LINC02560-201ENST00000596379 459 ntBASIC16.47■□□□□ 0.23
COL28A1Q2UY09 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 AC010654.1-201ENST00000615722 808 ntBASIC16.47■□□□□ 0.23
COL28A1Q2UY09 AC008761.3-201ENST00000624803 892 ntBASIC16.47■□□□□ 0.23
COL28A1Q2UY09 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 AC138028.4-201ENST00000564984 1845 ntBASIC16.47■□□□□ 0.23
COL28A1Q2UY09 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.47■□□□□ 0.23
COL28A1Q2UY09 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 AL606495.2-201ENST00000605867 535 ntBASIC16.46■□□□□ 0.23
COL28A1Q2UY09 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
COL28A1Q2UY09 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
COL28A1Q2UY09 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL28A1Q2UY09 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.46■□□□□ 0.22
COL28A1Q2UY09 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms